Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

21297 11 - 74689063 - 74689131 1 69

GTG ...

VVL ...

21299 11 + 120488172 - 120488285 1 114

GTG ...

VDK ...

21301 11 - 121336956 - 121337009 1 54

TTG ...

LHV ...

21303 11 - 50207118 - 50207264 1 147

ATG ...

MDT ...

21305 11 + 102189938 - 102190147 1 210

CTG ...

LSA ...

21307 11 + 82795757 - 82795795 1 39

TTG ...

LEG ...

21309 11 - 55409896 - 55409958 1 63

TTG ...

LPG ...

21311 11 - 120597642 - 120597746 1 105

ATG ...

MAA ...

21313 11 - 103000243 - 103000329 1 87

CTG ...

LAS ...

21315 11 - 87983901 - 87983945 1 45

ATG ...

MPL ...

21318 11 + 107994421 - 107994621 1 201

ATG ...

MLL ...

21321 11 - 84911467 - 84911559 1 93

CTG ...

LMR ...

21323 11 + 53583887 - 53584033 1 147

TTG ...

LST ...

21325 11 - 110311276 - 110311341 1 66

CTG ...

LAV ...

21327 11 - 120411652 - 120411726 1 75

CTG ...

LEL ...

21329 11 - 62525201 - 62525305 1 105

CTG ...

LFH ...

21331 11 + 67586615 - 67586743 1 129

GTG ...

VMR ...

21333 11 - 121116882 - 121116920 1 39

ATG ...

MHL ...

21335 11 + 101283424 - 101283471 1 48

CTG ...

LEK ...

21337 11 + 100624232 - 100624270 1 39

GTG ...

VRP ...

21340 11 + 100624193 - 100624270 1 78

TTG ...

LKA ...

21342 11 - 23655422 - 23655571 1 150

GTG ...

VAC ...

21344 11 + 29733797 - 29733844 1 48

GTG ...

VIQ ...

21346 11 + 114686529 - 114686570 1 42

GTG ...

VTW ...

21348 11 - 61168222 - 61168356 1 135

CTG ...

LNR ...

21350 11 - 96911534 - 96911662 1 129

GTG ...

VQK ...

21352 11 + 106261618 - 106261737 1 120

CTG ...

LDK ...

21354 11 + 87190111 - 87190191 1 81

CTG ...

LEE ...

21356 1 - 134234192 - 134234380 1 189

CTG ...

LMC ...

21358 11 + 59775537 - 59775587 1 51

GTG ...

VQE ...

21360 11 + 9048783 - 9048818 1 36

CTG ...

LRA ...

21362 11 + 80391889 - 80391996 1 108

CTG ...

LFQ ...

21364 11 + 77982961 - 77983017 1 57

ATG ...

MAA ...

21367 11 - 101413890 - 101414063 1 174

GTG ...

VLR ...

21369 11 - 76243528 - 76243608 1 81

GTG ...

VKN ...

21371 11 - 76234326 - 76234478 1 153

TTG ...

LNY ...

21373 11 + 78536438 - 78536479 1 42

ATG ...

MLV ...

21376 11 - 102405689 - 102405781 1 93

ATG ...

MES ...

21378 11 + 58954919 - 58955041 1 123

CTG ...

LRS ...

21380 11 + 98795563 - 98795697 1 135

CTG ...

LRR ...

21383 11 + 75703399 - 75703503 1 105

GTG ...

VSG ...

21385 1 - 171342531 - 171342791 1 261

CTG ...

LRA ...

21388 11 - 105180762 - 105180971 1 210

ATG ...

MVH ...

21391 11 + 78538542 - 78538586 1 45

TTG ...

LHS ...

21393 11 - 101462945 - 101463004 1 60

CTG ...

LPC ...

21395 1 + 153448890 - 153448934 1 45

TTG ...

LNF ...

21397 11 + 53415402 - 53415515 1 114

CTG ...

LDK ...

21399 11 + 102193159 - 102193230 1 72

CTG ...

LAL ...

21401 1 + 152771515 - 152771544 1 30

CTG ...

LCC ...

21404 11 - 51604444 - 51604479 1 36

TTG ...

LFL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5