Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

21193 11 + 106051782 - 106051832 1 51

CTG ...

LEG ...

21195 11 + 87617775 - 87617909 1 135

CTG ...

LSP ...

21198 1 + 153445825 - 153446001 1 177

CTG ...

LQQ ...

21200 11 + 119943129 - 119943179 1 51

TTG ...

LSL ...

21202 11 - 84916095 - 84916130 1 36

CTG ...

LFG ...

21204 11 - 60906878 - 60906967 1 90

ATG ...

MWA ...

21206 11 + 116657230 - 116657286 1 57

CTG ...

LSH ...

21208 11 + 17212024 - 17212254 1 231

GTG ...

VFD ...

21210 11 - 29246997 - 29247251 1 255

CTG ...

LGA ...

21212 11 - 59827871 - 59827921 1 51

GTG ...

VLL ...

21214 11 - 62533887 - 62534003 1 117

GTG ...

VGN ...

21216 11 - 54740402 - 54740503 1 102

CTG ...

LEP ...

21218 1 - 118300804 - 118300962 1 159

CTG ...

LDS ...

21220 11 - 3256501 - 3256611 1 111

TTG ...

LNS ...

21222 11 + 82783585 - 82783692 1 108

ATG ...

MWD ...

21224 11 - 76243528 - 76243626 1 99

CTG ...

LHF ...

21226 11 + 3964029 - 3964064 1 36

GTG ...

VEL ...

21228 11 + 52403217 - 52403453 1 237

CTG ...

LRP ...

21230 11 - 104425027 - 104425173 1 147

CTG ...

LKH ...

21232 11 + 115566615 - 115566767 1 153

GTG ...

VPS ...

21234 11 + 70006565 - 70006594 1 30

CTG ...

LRD ...

21236 11 + 78538515 - 78538586 1 72

CTG ...

LCC ...

21238 1 - 143702549 - 143702773 1 225

TTG ...

LSV ...

21241 11 + 96855278 - 96855337 1 60

TTG ...

LLE ...

21243 11 - 96827727 - 96827870 1 144

CTG ...

LGP ...

21245 11 + 58331446 - 58331523 1 78

GTG ...

VRC ...

21247 11 + 72445979 - 72446065 1 87

TTG ...

LAD ...

21249 11 - 55399129 - 55399311 1 183

CTG ...

LDS ...

21251 11 + 70650991 - 70651143 1 153

CTG ...

LYI ...

21253 11 - 43730474 - 43730584 1 111

TTG ...

LVL ...

21255 11 + 57527952 - 57528008 1 57

CTG ...

LRS ...

21257 11 + 78539963 - 78539995 1 33

TTG ...

LAS ...

21259 11 - 61162770 - 61162946 1 177

GTG ...

VQA ...

21261 11 - 120437495 - 120437527 1 33

CTG ...

LER ...

21263 11 + 72443533 - 72443700 1 168

GTG ...

VIL ...

21265 11 - 115608386 - 115608475 1 90

CTG ...

LLL ...

21267 11 + 70647591 - 70647647 1 57

TTG ...

LLL ...

21269 11 + 98685955 - 98686095 1 141

CTG ...

LQF ...

21271 11 + 84195578 - 84195691 1 114

CTG ...

LDL ...

21274 11 + 5574254 - 5574343 1 90

GTG ...

VLE ...

21276 1 + 156052132 - 156052167 1 36

TTG ...

LPS ...

21279 11 + 60539077 - 60539199 1 123

GTG ...

VSF ...

21281 11 - 55395858 - 55395956 1 99

CTG ...

LPG ...

21283 11 - 93965819 - 93965923 1 105

GTG ...

VSA ...

21285 11 + 48849705 - 48849989 1 285

GTG ...

VRR ...

21287 11 + 29693110 - 29693142 1 33

CTG ...

LPN ...

21289 1 + 59763822 - 59763863 1 42

ATG ...

MVE ...

21291 11 - 70010694 - 70010756 1 63

CTG ...

LQR ...

21293 11 - 116852953 - 116852991 1 39

CTG ...

LRF ...

21295 11 + 53583962 - 53584033 1 72

CTG ...

LTR ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5