Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

21082 11 - 85214237 - 85214347 1 111

CTG ...

LMQ ...

21084 11 - 103686534 - 103686680 1 147

TTG ...

LQT ...

21086 11 + 78313832 - 78313993 1 162

CTG ...

LEA ...

21088 11 + 101120572 - 101120634 1 63

ATG ...

MCR ...

21090 11 - 21566616 - 21566693 1 78

CTG ...

LEQ ...

21092 11 - 69603482 - 69603523 1 42

ATG ...

MVS ...

21094 11 + 117813320 - 117813475 1 156

GTG ...

VDA ...

21096 11 - 61174598 - 61174840 1 243

CTG ...

LAV ...

21098 11 - 95286288 - 95286401 1 114

TTG ...

LEN ...

21101 11 - 85215214 - 85215246 1 33

CTG ...

LFS ...

21103 11 + 3964015 - 3964068 1 54

TTG ...

LNF ...

21105 11 - 69601248 - 69601358 1 111

GTG ...

VEV ...

21107 11 + 83488939 - 83489049 1 111

GTG ...

VSR ...

21110 11 + 75567023 - 75567169 1 147

CTG ...

LLT ...

21112 11 - 102155694 - 102155825 1 132

GTG ...

VKR ...

21114 11 - 54740402 - 54740548 1 147

CTG ...

LLP ...

21117 11 + 115580758 - 115580799 1 42

CTG ...

LLE ...

21119 11 - 85194581 - 85194610 1 30

ATG ...

MLR ...

21121 11 + 58955026 - 58955130 1 105

CTG ...

LLG ...

21123 11 - 87987245 - 87987343 1 99

CTG ...

LLL ...

21125 11 + 85581051 - 85581242 1 192

GTG ...

VTH ...

21127 1 - 134234265 - 134234318 1 54

TTG ...

LAS ...

21129 11 + 4212804 - 4212914 1 111

GTG ...

VLK ...

21131 11 - 70664111 - 70664215 1 105

GTG ...

VAN ...

21133 11 + 52242602 - 52242655 1 54

ATG ...

MKE ...

21136 11 + 61487796 - 61487984 1 189

TTG ...

LIG ...

21138 11 + 69995923 - 69996057 1 135

GTG ...

VER ...

21142 11 - 70010296 - 70010403 1 108

CTG ...

LQS ...

21144 11 + 106285566 - 106285649 1 84

CTG ...

LSC ...

21146 11 - 96050252 - 96050314 1 63

ATG ...

MLK ...

21148 11 - 50311651 - 50311680 1 30

ATG ...

MIL ...

21150 1 + 134585176 - 134585220 1 45

GTG ...

VMS ...

21155 11 - 120562497 - 120562538 1 42

TTG ...

LVW ...

21157 11 + 31061393 - 31061620 1 228

TTG ...

LDL ...

21159 1 + 88218351 - 88218395 1 45

GTG ...

VPM ...

21162 11 - 97164720 - 97164782 1 63

TTG ...

LEA ...

21164 11 - 50943546 - 50943638 1 93

ATG ...

MTP ...

21166 11 + 101468228 - 101468329 1 102

GTG ...

VSA ...

21168 11 - 95286288 - 95286392 1 105

CTG ...

LTS ...

21170 11 + 78518099 - 78518245 1 147

CTG ...

LRA ...

21172 11 - 86726251 - 86726283 1 33

CTG ...

LQR ...

21174 11 - 101119620 - 101119826 1 207

GTG ...

VTP ...

21176 11 - 76239448 - 76239489 1 42

ATG ...

MAS ...

21178 11 + 88204457 - 88204522 1 66

CTG ...

LET ...

21180 11 + 31975045 - 31975131 1 87

GTG ...

VEQ ...

21182 1 - 67009907 - 67009963 1 57

TTG ...

LSI ...

21184 11 - 97034740 - 97034928 1 189

CTG ...

LSS ...

21187 1 + 105664429 - 105664641 1 213

CTG ...

LTA ...

21189 11 + 117356339 - 117356416 1 78

CTG ...

LQT ...

21191 11 + 45909237 - 45909287 1 51

GTG ...

VQP ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5