Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

20967 11 + 69587604 - 69587636 1 33

CTG ...

LGQ ...

20970 1 - 166238259 - 166238342 1 84

ATG ...

MRR ...

20973 11 - 106213173 - 106213226 1 54

CTG ...

LSL ...

20975 11 - 115608386 - 115608604 1 219

CTG ...

LVL ...

20977 11 + 58955029 - 58955130 1 102

CTG ...

LGR ...

20979 11 + 85581198 - 85581242 1 45

TTG ...

LDF ...

20981 11 - 4782172 - 4782282 1 111

TTG ...

LKL ...

20984 11 + 45893876 - 45893947 1 72

GTG ...

VMR ...

20986 11 - 3256501 - 3256662 1 162

TTG ...

LGH ...

20988 1 - 128389115 - 128389153 1 39

ATG ...

MMP ...

20990 11 + 82783552 - 82783692 1 141

GTG ...

VPP ...

20992 11 - 5060791 - 5061045 1 255

CTG ...

LSS ...

20994 1 - 54990334 - 54990378 1 45

TTG ...

LSI ...

20996 1 + 98480677 - 98480790 1 114

TTG ...

LKF ...

21000 11 - 76134405 - 76134464 1 60

CTG ...

LEH ...

21003 1 - 181203020 - 181203148 1 129

CTG ...

LLL ...

21006 11 - 60740594 - 60740644 1 51

CTG ...

LQA ...

21009 11 + 109663019 - 109663063 1 45

ATG ...

MEH ...

21011 11 + 17194734 - 17194865 1 132

TTG ...

LKM ...

21013 11 - 4848958 - 4849191 1 234

CTG ...

LSL ...

21015 1 - 60097640 - 60097750 1 111

ATG ...

MFP ...

21017 11 + 101567165 - 101567266 1 102

TTG ...

LLK ...

21019 11 - 60789558 - 60789656 1 99

TTG ...

LTS ...

21021 11 + 60539029 - 60539199 1 171

GTG ...

VSH ...

21024 11 - 21559114 - 21559263 1 150

CTG ...

LSS ...

21026 11 - 118320111 - 118320155 1 45

ATG ...

MAT ...

21028 11 - 120151163 - 120151207 1 45

ATG ...

MAM ...

21030 11 - 69968426 - 69968530 1 105

CTG ...

LLH ...

21032 11 + 70844779 - 70844910 1 132

ATG ...

MRR ...

21035 11 + 80030058 - 80030090 1 33

CTG ...

LWN ...

21037 11 + 116214973 - 116215077 1 105

TTG ...

LQT ...

21039 11 + 75567026 - 75567169 1 144

CTG ...

LTA ...

21042 11 - 62525163 - 62525255 1 93

GTG ...

VRS ...

21044 11 - 50297054 - 50297086 1 33

ATG ...

MRK ...

21047 11 + 35121295 - 35121387 1 93

GTG ...

VMR ...

21049 11 - 20709599 - 20709721 1 123

CTG ...

LQD ...

21052 11 + 50383007 - 50383045 1 39

CTG ...

LCT ...

21055 11 + 94947652 - 94947783 1 132

TTG ...

LAK ...

21057 11 + 87201455 - 87201634 1 180

CTG ...

LSD ...

21059 11 + 75703468 - 75703503 1 36

CTG ...

LDQ ...

21061 11 + 6297149 - 6297217 1 69

GTG ...

VEE ...

21063 11 - 97181738 - 97181773 1 36

GTG ...

VWL ...

21065 11 - 86602004 - 86602033 1 30

GTG ...

VEQ ...

21067 11 + 119264395 - 119264514 1 120

CTG ...

LSQ ...

21069 11 + 67662117 - 67662170 1 54

CTG ...

LKG ...

21071 11 + 115582900 - 115583049 1 150

CTG ...

LYG ...

21073 11 + 119270107 - 119270136 1 30

CTG ...

LPR ...

21075 11 - 21559742 - 21559825 1 84

CTG ...

LGK ...

21077 11 + 5105882 - 5105977 1 96

GTG ...

VSL ...

21080 11 - 70978424 - 70978525 1 102

GTG ...

VIF ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5