Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

20859 11 - 110311276 - 110311413 1 138

TTG ...

LTE ...

20862 11 + 52396494 - 52396607 1 114

GTG ...

VRG ...

20864 11 - 4849041 - 4849079 1 39

GTG ...

VAL ...

20866 11 - 97165352 - 97165396 1 45

CTG ...

LLL ...

20868 11 - 87987245 - 87987337 1 93

CTG ...

LQD ...

20871 11 - 3254487 - 3254612 1 126

GTG ...

VKS ...

20873 11 + 69324183 - 69324260 1 78

TTG ...

LTG ...

20875 11 - 96827727 - 96827843 1 117

GTG ...

VLC ...

20877 11 - 101414057 - 101414095 1 39

CTG ...

LMT ...

20880 11 - 3452205 - 3452279 1 75

CTG ...

LAR ...

20882 1 - 172081126 - 172081314 1 189

TTG ...

LCG ...

20884 11 + 75756990 - 75757031 1 42

ATG ...

MKF ...

20886 11 - 100584220 - 100584354 1 135

GTG ...

VGP ...

20888 11 + 75637437 - 75637589 1 153

CTG ...

LKL ...

20890 11 + 70647374 - 70647469 1 96

CTG ...

LSI ...

20892 11 + 61487754 - 61487984 1 231

GTG ...

VTH ...

20894 11 + 94214550 - 94214657 1 108

ATG ...

MEC ...

20896 11 - 34094274 - 34094408 1 135

CTG ...

LLC ...

20899 11 + 67683371 - 67683451 1 81

GTG ...

VDP ...

20901 11 + 101285679 - 101285813 1 135

TTG ...

LVP ...

20903 11 + 78305159 - 78305380 1 222

CTG ...

LAT ...

20905 11 + 70651012 - 70651143 1 132

ATG ...

MRS ...

20907 11 + 105281103 - 105281258 1 156

CTG ...

LAY ...

20909 11 - 85214237 - 85214323 1 87

CTG ...

LKR ...

20911 11 + 101089684 - 101089899 1 216

GTG ...

VKA ...

20914 11 + 102435390 - 102435500 1 111

TTG ...

LKS ...

20916 11 + 98682826 - 98683023 1 198

GTG ...

VEM ...

20918 11 - 5541943 - 5542068 1 126

CTG ...

LES ...

20920 11 + 67683362 - 67683451 1 90

CTG ...

LRK ...

20922 11 + 60539167 - 60539199 1 33

GTG ...

VRR ...

20924 11 + 29740990 - 29741082 1 93

TTG ...

LMW ...

20926 11 + 109662966 - 109663127 1 162

ATG ...

MGN ...

20928 11 - 35816633 - 35816677 1 45

GTG ...

VTH ...

20930 11 + 22995939 - 22996046 1 108

TTG ...

LSK ...

20932 11 - 3264759 - 3264845 1 87

CTG ...

LLK ...

20934 11 + 69070879 - 69070986 1 108

TTG ...

LMS ...

20936 11 - 103687521 - 103687586 1 66

CTG ...

LER ...

20938 11 + 6416671 - 6416739 1 69

GTG ...

VMA ...

20940 11 - 78080033 - 78080317 1 285

TTG ...

LLG ...

20942 1 + 134425938 - 134426099 1 162

TTG ...

LTM ...

20945 11 + 78320613 - 78320690 1 78

CTG ...

LKA ...

20947 11 + 115566675 - 115566767 1 93

TTG ...

LRK ...

20949 11 - 101119620 - 101119790 1 171

CTG ...

LKG ...

20951 11 + 115765461 - 115765496 1 36

ATG ...

MAA ...

20954 11 + 80389266 - 80389334 1 69

TTG ...

LMP ...

20956 11 - 61168222 - 61168347 1 126

CTG ...

LHS ...

20958 11 - 103679236 - 103679334 1 99

CTG ...

LIE ...

20960 11 - 60804259 - 60804357 1 99

CTG ...

LIA ...

20963 11 - 50943546 - 50943734 1 189

CTG ...

LRV ...

20965 11 + 105247507 - 105247599 1 93

TTG ...

LRL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5