Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

20746 11 + 98694153 - 98694323 1 171

GTG ...

VIE ...

20749 11 - 69980187 - 69980297 1 111

GTG ...

VVT ...

20751 11 + 119943117 - 119943179 1 63

CTG ...

LLL ...

20753 11 - 95275786 - 95275884 1 99

CTG ...

LID ...

20756 11 + 88047861 - 88047980 1 120

GTG ...

VAR ...

20758 11 + 118019640 - 118019726 1 87

GTG ...

VTS ...

20762 11 - 62525163 - 62525270 1 108

CTG ...

LDE ...

20764 11 - 29246997 - 29247080 1 84

CTG ...

LGS ...

20766 11 - 3648398 - 3648592 1 195

CTG ...

LLG ...

20768 1 + 134410957 - 134411079 1 123

CTG ...

LPA ...

20771 11 + 52245093 - 52245125 1 33

ATG ...

MTL ...

20774 11 - 76233187 - 76233228 1 42

GTG ...

VQV ...

20776 1 - 54990239 - 54990415 1 177

GTG ...

VQN ...

20779 11 + 106262138 - 106262329 1 192

CTG ...

LFV ...

20781 11 - 101119620 - 101119802 1 183

ATG ...

MLW ...

20783 11 - 4427212 - 4427337 1 126

GTG ...

VVK ...

20785 11 + 80462646 - 80462675 1 30

TTG ...

LHF ...

20788 11 - 62525201 - 62525239 1 39

CTG ...

LRS ...

20790 11 + 121421554 - 121421583 1 30

ATG ...

MTR ...

20793 11 + 52242599 - 52242655 1 57

ATG ...

MMK ...

20795 11 + 82794534 - 82794587 1 54

CTG ...

LFV ...

20797 11 + 72266537 - 72266572 1 36

TTG ...

LVT ...

20799 11 + 58923726 - 58923974 1 249

CTG ...

LSP ...

20801 11 - 121336956 - 121337039 1 84

GTG ...

VFT ...

20803 11 - 69970504 - 69970638 1 135

GTG ...

VTL ...

20805 11 - 70239626 - 70239667 1 42

GTG ...

VIM ...

20808 11 + 97834150 - 97834191 1 42

CTG ...

LSP ...

20810 11 - 6273815 - 6273886 1 72

GTG ...

VYT ...

20812 11 + 3330898 - 3331008 1 111

CTG ...

LAV ...

20815 11 + 4212822 - 4212914 1 93

CTG ...

LYR ...

20817 11 - 50943546 - 50943659 1 114

GTG ...

VTR ...

20819 11 - 5060791 - 5061069 1 279

CTG ...

LPG ...

20821 11 + 69050396 - 69050485 1 90

GTG ...

VLC ...

20823 11 - 85214237 - 85214344 1 108

ATG ...

MQA ...

20825 11 + 119264383 - 119264514 1 132

CTG ...

LSV ...

20827 11 - 98707114 - 98707209 1 96

CTG ...

LVL ...

20829 11 - 6439372 - 6439452 1 81

CTG ...

LEA ...

20831 11 - 85196077 - 85196121 1 45

CTG ...

LQS ...

20833 11 + 101285739 - 101285813 1 75

CTG ...

LHE ...

20835 11 + 17229802 - 17229867 1 66

CTG ...

LPQ ...

20837 11 + 35234841 - 35234912 1 72

CTG ...

LNK ...

20840 11 + 4728591 - 4728644 1 54

CTG ...

LPS ...

20842 11 + 88049419 - 88049685 1 267

CTG ...

LPT ...

20844 11 + 69998410 - 69998535 1 126

TTG ...

LLR ...

20846 11 - 118320111 - 118320164 1 54

ATG ...

MTS ...

20848 11 + 101283855 - 101283896 1 42

GTG ...

VFS ...

20850 1 + 66700976 - 66701032 1 57

CTG ...

LRM ...

20852 1 + 171461297 - 171461368 1 72

CTG ...

LNI ...

20854 11 + 114686463 - 114686570 1 108

CTG ...

LVC ...

20856 11 - 72214159 - 72214215 1 57

ATG ...

MML ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5