Metam
ORF

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ORF Browser

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

20637 11 - 106255316 - 106255348 1 33

TTG ...

LDL ...

20639 1 + 92937952 - 92937999 1 48

GTG ...

VPH ...

20642 11 - 69601248 - 69601280 1 33

GTG ...

VAF ...

20644 11 + 67675665 - 67675766 1 102

TTG ...

LSN ...

20646 11 + 119264308 - 119264514 1 207

CTG ...

LQA ...

20648 11 - 106783959 - 106783988 1 30

TTG ...

LLP ...

20650 11 - 97164720 - 97164752 1 33

TTG ...

LKG ...

20652 11 - 69602634 - 69602783 1 150

CTG ...

LGD ...

20654 11 - 101098163 - 101098336 1 174

TTG ...

LSE ...

20656 11 + 82790537 - 82790701 1 165

GTG ...

VER ...

20658 11 - 103000243 - 103000320 1 78

GTG ...

VPT ...

20660 11 + 58923855 - 58923974 1 120

CTG ...

LQP ...

20662 11 + 112784843 - 112785136 1 294

TTG ...

LRP ...

20665 11 + 70647594 - 70647647 1 54

TTG ...

LLL ...

20667 11 + 101565723 - 101565785 1 63

GTG ...

VTQ ...

20669 11 + 87853744 - 87853860 1 117

CTG ...

LQR ...

20671 11 - 96913657 - 96913746 1 90

CTG ...

LTI ...

20673 11 + 58920462 - 58920629 1 168

GTG ...

VAL ...

20675 11 - 120579963 - 120580007 1 45

ATG ...

MQH ...

20677 11 + 98805385 - 98805432 1 48

TTG ...

LEI ...

20680 11 - 97164932 - 97165075 1 144

GTG ...

VKP ...

20682 11 - 106250558 - 106250650 1 93

TTG ...

LGT ...

20685 11 - 21563972 - 21564157 1 186

GTG ...

VGS ...

20687 11 + 78540958 - 78541002 1 45

CTG ...

LQA ...

20689 1 + 82587396 - 82587443 1 48

CTG ...

LLL ...

20691 11 - 4427212 - 4427292 1 81

CTG ...

LRG ...

20693 11 - 69602705 - 69602764 1 60

TTG ...

LGT ...

20695 11 - 70664111 - 70664149 1 39

CTG ...

LRQ ...

20697 11 + 70000793 - 70000897 1 105

TTG ...

LGG ...

20699 11 - 120421465 - 120421539 1 75

ATG ...

MAI ...

20701 11 - 96050252 - 96050299 1 48

CTG ...

LIA ...

20703 11 - 55395858 - 55395935 1 78

CTG ...

LSW ...

20705 11 - 84916255 - 84916299 1 45

TTG ...

LEK ...

20707 11 + 116214934 - 116215077 1 144

CTG ...

LQK ...

20709 1 + 63177786 - 63177920 1 135

TTG ...

LKQ ...

20712 11 + 83291814 - 83291849 1 36

CTG ...

LRN ...

20715 11 - 101119620 - 101119676 1 57

TTG ...

LRR ...

20717 11 + 88049088 - 88049168 1 81

GTG ...

VRQ ...

20719 11 + 82790525 - 82790701 1 177

CTG ...

LQD ...

20721 1 + 179679588 - 179679752 1 165

TTG ...

LCI ...

20723 11 + 69940682 - 69940759 1 78

CTG ...

LSP ...

20725 11 - 55395858 - 55395995 1 138

CTG ...

LLF ...

20727 11 - 120617760 - 120617813 1 54

CTG ...

LKG ...

20730 1 - 65032617 - 65032691 1 75

TTG ...

LSS ...

20732 11 + 102193150 - 102193230 1 81

TTG ...

LTA ...

20734 11 - 3252159 - 3252212 1 54

GTG ...

VED ...

20736 11 - 98707114 - 98707203 1 90

CTG ...

LLG ...

20738 11 - 96819661 - 96819750 1 90

GTG ...

VPL ...

20741 1 + 133365500 - 133365697 1 198

TTG ...

LTE ...

20744 11 + 4213872 - 4214045 1 174

CTG ...

LKH ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5