Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

20524 11 - 3262360 - 3262623 1 264

GTG ...

VGF ...

20526 11 + 80395470 - 80395550 1 81

GTG ...

VPP ...

20528 11 + 78255106 - 78255138 1 33

CTG ...

LRA ...

20530 1 - 78479953 - 78479988 1 36

CTG ...

LAR ...

20533 11 + 106262623 - 106262724 1 102

TTG ...

LTR ...

20535 11 + 58918912 - 58918977 1 66

TTG ...

LVS ...

20537 11 - 58933985 - 58934122 1 138

GTG ...

VLP ...

20539 11 + 70940436 - 70940483 1 48

CTG ...

LND ...

20541 11 + 67670598 - 67670699 1 102

TTG ...

LGE ...

20543 11 - 100432914 - 100432949 1 36

TTG ...

LCP ...

20546 1 + 165461380 - 165461487 1 108

CTG ...

LSI ...

20549 11 + 60538939 - 60539199 1 261

GTG ...

VIQ ...

20551 11 + 4167792 - 4167914 1 123

CTG ...

LMQ ...

20553 11 - 118310608 - 118310685 1 78

ATG ...

MAR ...

20555 11 - 50296282 - 50296323 1 42

TTG ...

LNR ...

20557 1 - 160212679 - 160212777 1 99

CTG ...

LWS ...

20560 11 + 121503730 - 121503795 1 66

CTG ...

LAL ...

20562 11 - 50210549 - 50210683 1 135

CTG ...

LLQ ...

20564 11 - 78507710 - 78507757 1 48

CTG ...

LYV ...

20566 11 - 69658562 - 69658648 1 87

CTG ...

LSL ...

20568 11 + 20201458 - 20201628 1 171

GTG ...

VAA ...

20573 1 + 171345731 - 171345790 1 60

GTG ...

VWA ...

20576 11 - 59809656 - 59809703 1 48

CTG ...

LGW ...

20578 1 + 191822234 - 191822368 1 135

CTG ...

LKH ...

20580 11 + 98693395 - 98693541 1 147

CTG ...

LIV ...

20582 11 + 119915437 - 119915526 1 90

CTG ...

LRQ ...

20584 11 + 106284690 - 106284842 1 153

CTG ...

LSP ...

20586 11 + 101071908 - 101072057 1 150

TTG ...

LGL ...

20588 11 - 116471397 - 116471549 1 153

GTG ...

VTN ...

20590 11 - 6274721 - 6274861 1 141

GTG ...

VCA ...

20593 11 + 101120156 - 101120284 1 129

CTG ...

LAG ...

20595 11 - 51997804 - 51997869 1 66

GTG ...

VAP ...

20597 11 + 93908873 - 93908941 1 69

GTG ...

VFP ...

20600 11 - 120711668 - 120711742 1 75

CTG ...

LQL ...

20602 11 + 115566717 - 115566767 1 51

CTG ...

LQK ...

20604 11 - 116546867 - 116546929 1 63

CTG ...

LGK ...

20607 11 + 101567189 - 101567266 1 78

GTG ...

VIS ...

20609 11 + 31061492 - 31061620 1 129

CTG ...

LEM ...

20611 11 + 3680785 - 3680892 1 108

CTG ...

LCL ...

20613 1 + 134625138 - 134625200 1 63

CTG ...

LDC ...

20616 11 + 117077285 - 117077320 1 36

GTG ...

VGA ...

20618 11 + 106037130 - 106037396 1 267

CTG ...

LHG ...

20620 11 - 102877606 - 102877665 1 60

TTG ...

LIL ...

20622 11 + 45886518 - 45886550 1 33

CTG ...

LEN ...

20624 1 + 163915753 - 163915833 1 81

CTG ...

LGI ...

20627 11 + 116214892 - 116215077 1 186

TTG ...

LSL ...

20629 11 + 17229826 - 17229867 1 42

CTG ...

LTT ...

20631 11 + 78540913 - 78541002 1 90

TTG ...

LLK ...

20633 11 - 120595208 - 120595297 1 90

TTG ...

LSH ...

20635 11 + 106282859 - 106282918 1 60

CTG ...

LST ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5