Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

20416 11 - 85194581 - 85194616 1 36

ATG ...

MKM ...

20418 11 + 67662102 - 67662170 1 69

CTG ...

LLQ ...

20420 1 + 85907066 - 85907218 1 153

ATG ...

MSA ...

20422 11 - 115608386 - 115608571 1 186

CTG ...

LEK ...

20424 11 + 102434724 - 102434843 1 120

CTG ...

LHC ...

20426 11 - 120421361 - 120421438 1 78

GTG ...

VVE ...

20429 11 - 115708390 - 115708458 1 69

TTG ...

LAA ...

20432 11 + 52121000 - 52121068 1 69

GTG ...

VVT ...

20434 11 + 67586648 - 67586743 1 96

GTG ...

VLS ...

20437 1 + 75509835 - 75510068 1 234

CTG ...

LRM ...

20439 11 - 115491580 - 115491675 1 96

GTG ...

VPL ...

20442 11 + 87737562 - 87737597 1 36

CTG ...

LRL ...

20444 11 + 55109016 - 55109084 1 69

CTG ...

LER ...

20446 11 - 103679236 - 103679343 1 108

GTG ...

VMR ...

20448 11 + 98690599 - 98690667 1 69

GTG ...

VFP ...

20450 11 + 4212993 - 4213064 1 72

CTG ...

LVQ ...

20452 11 + 72266871 - 72266918 1 48

CTG ...

LVL ...

20454 11 + 48849846 - 48849989 1 144

CTG ...

LDL ...

20456 11 + 62847328 - 62847384 1 57

GTG ...

VKR ...

20459 11 - 50298103 - 50298186 1 84

TTG ...

LGG ...

20461 11 - 106785112 - 106785231 1 120

CTG ...

LRR ...

20463 11 - 21323190 - 21323255 1 66

CTG ...

LDH ...

20466 11 + 60553766 - 60553906 1 141

TTG ...

LPP ...

20468 11 + 117356676 - 117356747 1 72

CTG ...

LGR ...

20470 1 - 36600077 - 36600169 1 93

CTG ...

LLA ...

20473 11 + 80395396 - 80395515 1 120

ATG ...

MVV ...

20475 11 - 75348208 - 75348255 1 48

GTG ...

VGH ...

20477 11 + 87201443 - 87201634 1 192

GTG ...

VKT ...

20479 11 + 87857922 - 87857993 1 72

GTG ...

VSS ...

20481 11 - 116490044 - 116490205 1 162

CTG ...

LLL ...

20483 11 - 115490599 - 115490685 1 87

CTG ...

LAL ...

20485 11 - 75316101 - 75316172 1 72

CTG ...

LQP ...

20487 11 + 115583754 - 115583822 1 69

CTG ...

LRL ...

20489 11 - 101293997 - 101294110 1 114

CTG ...

LEL ...

20491 11 - 54756425 - 54756463 1 39

GTG ...

VSF ...

20493 11 - 55399188 - 55399274 1 87

GTG ...

VTG ...

20495 11 + 60539140 - 60539199 1 60

GTG ...

VSE ...

20497 11 + 58955062 - 58955130 1 69

CTG ...

LPN ...

20499 11 + 98693401 - 98693541 1 141

GTG ...

VVE ...

20501 11 - 97164932 - 97164994 1 63

TTG ...

LNT ...

20503 11 + 78314361 - 78314501 1 141

TTG ...

LLS ...

20505 11 + 58331404 - 58331523 1 120

TTG ...

LEL ...

20507 11 - 55398544 - 55398639 1 96

CTG ...

LLA ...

20509 11 + 3649580 - 3649621 1 42

CTG ...

LFS ...

20512 11 + 80395450 - 80395515 1 66

ATG ...

MDR ...

20514 11 - 118303668 - 118303853 1 186

ATG ...

MSA ...

20516 11 - 58933985 - 58934128 1 144

ATG ...

MRV ...

20518 11 + 119915488 - 119915526 1 39

CTG ...

LAR ...

20520 11 + 31061540 - 31061620 1 81

TTG ...

LVF ...

20522 11 + 58954916 - 58955041 1 126

CTG ...

LLR ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5