Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

20307 1 + 153428593 - 153428736 1 144

CTG ...

LLE ...

20309 11 + 75756963 - 75757031 1 69

TTG ...

LLS ...

20311 11 - 113751647 - 113751775 1 129

ATG ...

MGR ...

20313 11 + 17193025 - 17193225 1 201

TTG ...

LSV ...

20315 11 + 52403187 - 52403453 1 267

CTG ...

LRR ...

20317 11 - 55398489 - 55398623 1 135

TTG ...

LRR ...

20319 11 + 58109627 - 58109668 1 42

GTG ...

VAP ...

20322 1 + 134631253 - 134631402 1 150

GTG ...

VMA ...

20324 11 - 55450470 - 55450577 1 108

CTG ...

LST ...

20326 11 + 109660123 - 109660173 1 51

GTG ...

VLK ...

20328 11 + 106276725 - 106276871 1 147

CTG ...

LRS ...

20330 11 - 102404022 - 102404138 1 117

CTG ...

LYW ...

20332 1 - 44091357 - 44091395 1 39

TTG ...

LYI ...

20335 11 + 31965743 - 31965880 1 138

GTG ...

VAA ...

20337 11 + 98682610 - 98682711 1 102

GTG ...

VRP ...

20339 11 + 62883676 - 62883810 1 135

GTG ...

VVY ...

20341 11 + 58917998 - 58918030 1 33

ATG ...

MAV ...

20343 11 + 72266465 - 72266572 1 108

TTG ...

LSG ...

20345 11 - 105935375 - 105935494 1 120

GTG ...

VVV ...

20347 11 - 70010694 - 70010759 1 66

CTG ...

LLQ ...

20349 11 - 93965819 - 93965908 1 90

TTG ...

LPS ...

20351 11 + 72441462 - 72441581 1 120

CTG ...

LEH ...

20353 11 - 77509594 - 77509623 1 30

CTG ...

LTS ...

20356 11 + 58954799 - 58954906 1 108

GTG ...

VPA ...

20358 11 + 101580615 - 101580758 1 144

CTG ...

LMA ...

20360 11 + 58923753 - 58923974 1 222

GTG ...

VGI ...

20362 11 - 84512133 - 84512273 1 141

CTG ...

LAV ...

20364 11 - 58933985 - 58934137 1 153

CTG ...

LRR ...

20366 11 - 121116882 - 121116914 1 33

CTG ...

LNS ...

20369 11 + 100571520 - 100571792 1 273

GTG ...

VKQ ...

20371 11 - 59826224 - 59826391 1 168

TTG ...

LES ...

20373 11 + 5575721 - 5575780 1 60

GTG ...

VDI ...

20375 11 - 4849041 - 4849073 1 33

CTG ...

LRP ...

20377 11 + 101120560 - 101120634 1 75

CTG ...

LET ...

20379 11 - 106255316 - 106255351 1 36

TTG ...

LLD ...

20381 11 - 102870994 - 102871077 1 84

GTG ...

VYG ...

20383 11 + 117354820 - 117354984 1 165

CTG ...

LDI ...

20385 11 - 120404202 - 120404237 1 36

GTG ...

VSS ...

20387 11 - 53429102 - 53429176 1 75

ATG ...

MAS ...

20389 11 + 102189772 - 102189963 1 192

GTG ...

VGL ...

20392 11 - 78223150 - 78223197 1 48

GTG ...

VNK ...

20394 11 - 101302166 - 101302216 1 51

CTG ...

LEV ...

20396 11 - 53430420 - 53430650 1 231

GTG ...

VIS ...

20398 1 + 185372941 - 185373108 1 168

TTG ...

LKQ ...

20401 11 - 106158674 - 106158775 1 102

CTG ...

LFK ...

20406 11 - 58937136 - 58937192 1 57

ATG ...

MMP ...

20408 11 + 67670631 - 67670699 1 69

CTG ...

LAD ...

20410 11 + 114686430 - 114686570 1 141

CTG ...

LGL ...

20412 11 + 114686412 - 114686570 1 159

GTG ...

VLA ...

20414 11 - 59836887 - 59836952 1 66

CTG ...

LDT ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5