Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

20199 11 + 58920480 - 58920629 1 150

GTG ...

VTP ...

20201 1 + 4828604 - 4828663 1 60

TTG ...

LQV ...

20203 11 + 70650937 - 70651143 1 207

GTG ...

VWT ...

20205 11 - 96064955 - 96064999 1 45

CTG ...

LGR ...

20207 11 - 72211901 - 72212005 1 105

GTG ...

VCE ...

20209 11 + 119915470 - 119915526 1 57

CTG ...

LER ...

20212 11 - 61166636 - 61166749 1 114

TTG ...

LCQ ...

20214 11 - 60794765 - 60794950 1 186

GTG ...

VRS ...

20216 1 - 55248806 - 55248946 1 141

GTG ...

VRR ...

20219 11 - 52000317 - 52000385 1 69

CTG ...

LNG ...

20221 1 - 182278972 - 182279037 1 66

ATG ...

MWA ...

20223 11 + 101567174 - 101567266 1 93

CTG ...

LRR ...

20225 1 - 144002068 - 144002277 1 210

CTG ...

LAA ...

20228 11 + 97834123 - 97834191 1 69

ATG ...

MVG ...

20230 11 - 120550616 - 120550672 1 57

ATG ...

MRQ ...

20233 11 - 118303769 - 118303834 1 66

CTG ...

LGH ...

20235 11 + 78304958 - 78305044 1 87

GTG ...

VGT ...

20237 11 - 102877606 - 102877689 1 84

TTG ...

LGI ...

20239 11 + 119915416 - 119915526 1 111

CTG ...

LKQ ...

20241 1 - 67009907 - 67009975 1 69

TTG ...

LLC ...

20244 11 + 29218462 - 29218551 1 90

TTG ...

LVG ...

20246 11 + 101471079 - 101471306 1 228

GTG ...

VGA ...

20248 11 + 9048732 - 9048818 1 87

CTG ...

LRP ...

20250 1 - 178332143 - 178332178 1 36

CTG ...

LKT ...

20252 11 + 54502922 - 54502978 1 57

TTG ...

LLK ...

20255 11 - 60789144 - 60789302 1 159

CTG ...

LQI ...

20257 11 - 78208825 - 78208995 1 171

TTG ...

LPQ ...

20259 11 + 52243643 - 52243723 1 81

ATG ...

MTL ...

20261 11 + 75620290 - 75620403 1 114

CTG ...

LFC ...

20264 11 + 78518147 - 78518245 1 99

GTG ...

VHR ...

20266 11 + 78516883 - 78516936 1 54

GTG ...

VLI ...

20268 11 - 3254487 - 3254627 1 141

CTG ...

LDA ...

20270 11 + 98686045 - 98686095 1 51

CTG ...

LMN ...

20272 11 - 3250266 - 3250361 1 96

TTG ...

LVW ...

20274 11 - 120151163 - 120151237 1 75

CTG ...

LGR ...

20276 11 - 69968434 - 69968466 1 33

ATG ...

MWT ...

20278 11 + 52245060 - 52245125 1 66

CTG ...

LRR ...

20280 11 + 17193007 - 17193225 1 219

TTG ...

LDN ...

20282 11 - 97163910 - 97163942 1 33

GTG ...

VVA ...

20284 11 + 70649949 - 70650029 1 81

TTG ...

LGY ...

20286 1 + 88227059 - 88227151 1 93

CTG ...

LFL ...

20288 11 - 120713689 - 120713727 1 39

CTG ...

LWP ...

20290 1 - 86350776 - 86351012 1 237

GTG ...

VRK ...

20293 11 - 59827801 - 59827977 1 177

GTG ...

VDM ...

20295 11 + 94339625 - 94339699 1 75

CTG ...

LFR ...

20297 11 - 48816668 - 48816787 1 120

TTG ...

LAL ...

20299 11 - 61162770 - 61162994 1 225

CTG ...

LRG ...

20301 11 + 70525413 - 70525499 1 87

CTG ...

LFV ...

20303 11 + 69940670 - 69940759 1 90

ATG ...

MAP ...

20305 1 + 160199516 - 160199566 1 51

GTG ...

VVL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5