Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

20088 11 + 51620084 - 51620155 1 72

GTG ...

VKQ ...

20090 11 + 78315907 - 78316113 1 207

CTG ...

LAS ...

20093 11 + 107479543 - 107479665 1 123

CTG ...

LGY ...

20095 1 - 88204950 - 88205024 1 75

GTG ...

VEE ...

20098 11 + 72447181 - 72447333 1 153

GTG ...

VEI ...

20100 11 - 21562823 - 21562978 1 156

GTG ...

VGN ...

20102 11 + 75639483 - 75639569 1 87

CTG ...

LLR ...

20104 1 - 164438296 - 164438379 1 84

CTG ...

LKS ...

20106 11 + 98685598 - 98685702 1 105

CTG ...

LYK ...

20108 11 + 78315602 - 78315646 1 45

CTG ...

LQC ...

20110 11 + 50384686 - 50384727 1 42

GTG ...

VVV ...

20112 11 + 80438265 - 80438411 1 147

CTG ...

LKY ...

20114 11 + 70000702 - 70000743 1 42

TTG ...

LGT ...

20117 11 - 120543896 - 120543982 1 87

CTG ...

LRS ...

20120 11 - 100584220 - 100584279 1 60

CTG ...

LIP ...

20122 11 + 31081381 - 31081626 1 246

GTG ...

VNI ...

20124 11 - 54756425 - 54756469 1 45

CTG ...

LCV ...

20126 11 - 116082294 - 116082341 1 48

GTG ...

VRL ...

20128 11 - 106785387 - 106785488 1 102

GTG ...

VAA ...

20131 11 - 76234326 - 76234457 1 132

CTG ...

LGM ...

20133 11 - 120963856 - 120963894 1 39

GTG ...

VAS ...

20136 11 + 69050324 - 69050485 1 162

CTG ...

LDY ...

20138 11 + 87206001 - 87206081 1 81

GTG ...

VDS ...

20140 11 + 88048630 - 88048683 1 54

ATG ...

MAR ...

20142 1 + 4828586 - 4828663 1 78

ATG ...

MDG ...

20145 11 - 88955290 - 88955394 1 105

CTG ...

LML ...

20147 11 - 5534889 - 5534948 1 60

GTG ...

VQL ...

20149 11 - 69605329 - 69605490 1 162

CTG ...

LES ...

20151 11 + 75755614 - 75755745 1 132

ATG ...

MYW ...

20153 11 + 82795721 - 82795795 1 75

CTG ...

LAD ...

20155 11 + 80030028 - 80030090 1 63

GTG ...

VNE ...

20157 11 - 116471397 - 116471480 1 84

CTG ...

LIL ...

20159 11 + 52403244 - 52403453 1 210

ATG ...

MRT ...

20161 1 - 178331189 - 178331248 1 60

CTG ...

LLP ...

20163 11 + 31973571 - 31973606 1 36

ATG ...

MQL ...

20166 11 + 109665922 - 109665984 1 63

TTG ...

LKM ...

20168 1 + 82587405 - 82587443 1 39

CTG ...

LAA ...

20171 11 - 115612408 - 115612482 1 75

CTG ...

LGE ...

20173 11 + 78320403 - 78320456 1 54

CTG ...

LLQ ...

20175 11 + 20201598 - 20201642 1 45

GTG ...

VAA ...

20177 11 - 61157167 - 61157205 1 39

CTG ...

LEL ...

20179 11 + 4177444 - 4177509 1 66

CTG ...

LQY ...

20181 11 - 97165352 - 97165390 1 39

CTG ...

LEN ...

20183 11 - 59832958 - 59833140 1 183

GTG ...

VKF ...

20185 11 - 74689063 - 74689122 1 60

TTG ...

LVR ...

20187 11 - 74685947 - 74685982 1 36

GTG ...

VAS ...

20189 11 + 60539161 - 60539199 1 39

CTG ...

LPV ...

20191 11 + 67681245 - 67681337 1 93

GTG ...

VDL ...

20193 1 + 84900015 - 84900185 1 171

CTG ...

LWE ...

20196 11 + 83291786 - 83291824 1 39

CTG ...

LQP ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5