Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

19977 11 - 85214237 - 85214326 1 90

ATG ...

MLK ...

19979 11 - 115609046 - 115609096 1 51

CTG ...

LAQ ...

19981 11 - 70238329 - 70238445 1 117

CTG ...

LYE ...

19984 11 - 101098163 - 101098366 1 204

CTG ...

LVS ...

19986 11 - 3170583 - 3170666 1 84

TTG ...

LIY ...

19989 1 + 172115080 - 172115211 1 132

TTG ...

LDT ...

19991 11 + 67586660 - 67586743 1 84

CTG ...

LAP ...

19993 11 + 101283770 - 101283940 1 171

CTG ...

LRG ...

19995 11 - 116168046 - 116168087 1 42

CTG ...

LGS ...

19998 11 - 96911869 - 96911985 1 117

CTG ...

LAL ...

20001 11 - 100434691 - 100434723 1 33

GTG ...

VVG ...

20003 11 + 4160390 - 4160476 1 87

TTG ...

LSL ...

20005 11 - 105935375 - 105935512 1 138

CTG ...

LLV ...

20007 11 + 64999330 - 64999446 1 117

CTG ...

LVR ...

20010 11 - 85196077 - 85196130 1 54

ATG ...

MYR ...

20012 11 + 5105891 - 5105977 1 87

CTG ...

LVE ...

20014 1 + 191340805 - 191340882 1 78

CTG ...

LAS ...

20017 11 + 120099158 - 120099202 1 45

ATG ...

MAS ...

20020 11 + 106281936 - 106281992 1 57

CTG ...

LLG ...

20022 11 + 55109434 - 55109676 1 243

CTG ...

LAE ...

20024 11 - 69968434 - 69968487 1 54

ATG ...

MSQ ...

20026 11 + 96855305 - 96855337 1 33

TTG ...

LVL ...

20028 11 + 5569714 - 5569836 1 123

ATG ...

MLN ...

20030 11 + 67586711 - 67586743 1 33

ATG ...

MQN ...

20032 11 + 4177453 - 4177509 1 57

CTG ...

LSC ...

20034 11 - 97167625 - 97167693 1 69

ATG ...

MFS ...

20036 11 + 72443814 - 72443918 1 105

CTG ...

LLR ...

20038 11 - 102870994 - 102871062 1 69

GTG ...

VET ...

20040 11 + 45890705 - 45890827 1 123

CTG ...

LGE ...

20044 11 - 62538852 - 62538959 1 108

GTG ...

VSA ...

20046 11 + 101566277 - 101566414 1 138

CTG ...

LSS ...

20048 11 + 58920468 - 58920629 1 162

CTG ...

LLS ...

20050 1 - 36162157 - 36162363 1 207

GTG ...

VDS ...

20052 11 - 3262533 - 3262565 1 33

CTG ...

LKW ...

20054 11 + 60830696 - 60830731 1 36

ATG ...

MKL ...

20056 1 + 191613039 - 191613287 1 249

TTG ...

LSF ...

20058 11 + 88049100 - 88049168 1 69

ATG ...

MYV ...

20060 11 - 101294903 - 101295157 1 255

TTG ...

LEI ...

20062 11 + 60539071 - 60539199 1 129

GTG ...

VSV ...

20065 11 - 105935375 - 105935515 1 141

TTG ...

LLL ...

20067 11 - 78222095 - 78222256 1 162

CTG ...

LLN ...

20069 11 + 69940019 - 69940156 1 138

GTG ...

VGQ ...

20071 11 - 70014170 - 70014349 1 180

TTG ...

LEK ...

20073 11 - 96064955 - 96065023 1 69

TTG ...

LGP ...

20075 11 - 62525163 - 62525246 1 84

GTG ...

VVT ...

20077 11 - 78208046 - 78208237 1 192

GTG ...

VFP ...

20079 11 - 116471397 - 116471552 1 156

GTG ...

VVT ...

20081 11 + 52232039 - 52232107 1 69

GTG ...

VAL ...

20083 1 + 59764430 - 59764462 1 33

ATG ...

MKP ...

20086 11 - 78508641 - 78508670 1 30

GTG ...

VTW ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5