Metam
ORF

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ORF Browser

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

19865 11 + 50384695 - 50384727 1 33

ATG ...

MEV ...

19867 11 - 85210068 - 85210100 1 33

ATG ...

MCE ...

19869 11 + 97712476 - 97712535 1 60

CTG ...

LNA ...

19871 1 + 191607946 - 191608086 1 141

CTG ...

LAA ...

19873 11 - 70645780 - 70645833 1 54

GTG ...

VGT ...

19875 11 + 78189633 - 78189671 1 39

CTG ...

LPG ...

19877 11 + 22995933 - 22996046 1 114

GTG ...

VEL ...

19879 11 - 116082268 - 116082402 1 135

CTG ...

LSK ...

19881 11 - 100958788 - 100958883 1 96

ATG ...

MWC ...

19884 11 + 72441546 - 72441581 1 36

TTG ...

LLE ...

19886 1 + 150432846 - 150432884 1 39

CTG ...

LKT ...

19889 1 + 90604402 - 90604449 1 48

GTG ...

VYG ...

19892 11 - 69602906 - 69603109 1 204

TTG ...

LMI ...

19894 11 + 101283406 - 101283471 1 66

CTG ...

LSE ...

19896 11 - 78511841 - 78512020 1 180

CTG ...

LRA ...

19899 11 + 50379881 - 50379988 1 108

CTG ...

LTQ ...

19901 11 + 120483428 - 120483499 1 72

GTG ...

VAQ ...

19904 11 - 120543684 - 120543722 1 39

CTG ...

LKR ...

19906 11 - 72214112 - 72214180 1 69

TTG ...

LEF ...

19908 1 - 36578486 - 36578572 1 87

TTG ...

LPS ...

19911 11 + 6297173 - 6297217 1 45

TTG ...

LEN ...

19913 11 + 72677806 - 72677931 1 126

GTG ...

VET ...

19915 1 + 85894623 - 85894670 1 48

CTG ...

LAG ...

19917 11 - 69658562 - 69658612 1 51

CTG ...

LTG ...

19919 1 + 75143046 - 75143132 1 87

CTG ...

LAA ...

19922 11 + 106261945 - 106262052 1 108

TTG ...

LLA ...

19924 11 - 6193150 - 6193239 1 90

GTG ...

VTH ...

19926 11 + 93924545 - 93924688 1 144

CTG ...

LVY ...

19928 11 + 121605288 - 121605344 1 57

CTG ...

LDQ ...

19930 11 + 102435372 - 102435500 1 129

CTG ...

LPD ...

19933 11 - 30943687 - 30943854 1 168

TTG ...

LPS ...

19935 11 + 22994367 - 22994417 1 51

TTG ...

LHP ...

19938 11 - 62536278 - 62536367 1 90

CTG ...

LVK ...

19940 11 - 4427212 - 4427340 1 129

GTG ...

VVV ...

19943 11 - 53269684 - 53269776 1 93

GTG ...

VCP ...

19945 11 - 72211845 - 72212003 1 159

GTG ...

VRS ...

19947 11 - 61159201 - 61159287 1 87

TTG ...

LSP ...

19949 11 + 58923912 - 58923974 1 63

GTG ...

VVT ...

19951 11 + 72444922 - 72444981 1 60

TTG ...

LVD ...

19953 11 + 69990002 - 69990037 1 36

CTG ...

LSR ...

19956 11 - 51602509 - 51602682 1 174

TTG ...

LPS ...

19958 11 + 44557338 - 44557442 1 105

CTG ...

LLS ...

19960 11 - 78507710 - 78507766 1 57

CTG ...

LAE ...

19962 11 - 84470480 - 84470701 1 222

TTG ...

LTQ ...

19964 11 + 78315545 - 78315646 1 102

CTG ...

LGQ ...

19967 11 + 52403175 - 52403453 1 279

GTG ...

VGA ...

19969 11 - 106255316 - 106255369 1 54

CTG ...

LQK ...

19971 11 + 31101069 - 31101242 1 174

TTG ...

LEI ...

19973 11 - 30948073 - 30948102 1 30

GTG ...

VPF ...

19975 11 - 115608386 - 115608487 1 102

CTG ...

LAR ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5