Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

19752 1 + 75147011 - 75147055 1 45

CTG ...

LVQ ...

19754 11 + 70651006 - 70651143 1 138

CTG ...

LAM ...

19757 11 + 87433868 - 87433921 1 54

ATG ...

MTP ...

19760 11 - 50300918 - 50300959 1 42

TTG ...

LTT ...

19763 11 + 60537963 - 60538073 1 111

ATG ...

MLK ...

19765 11 - 48817152 - 48817316 1 165

ATG ...

MAL ...

19767 11 - 105935375 - 105935524 1 150

GTG ...

VLG ...

19769 11 + 4883734 - 4883775 1 42

GTG ...

VKP ...

19772 11 - 102405008 - 102405061 1 54

GTG ...

VRH ...

19774 1 + 191827231 - 191827485 1 255

CTG ...

LER ...

19776 11 + 22996398 - 22996529 1 132

GTG ...

VQL ...

19778 11 - 51626995 - 51627084 1 90

GTG ...

VDL ...

19780 1 - 134234192 - 134234263 1 72

TTG ...

LGC ...

19783 11 + 22997680 - 22997739 1 60

TTG ...

LKR ...

19786 1 - 178330583 - 178330651 1 69

GTG ...

VVA ...

19788 11 + 107994547 - 107994621 1 75

TTG ...

LLP ...

19790 11 + 119264425 - 119264514 1 90

GTG ...

VQE ...

19792 11 - 3252159 - 3252236 1 78

GTG ...

VLP ...

19794 1 - 54998034 - 54998075 1 42

ATG ...

MVF ...

19796 11 + 58954874 - 58954906 1 33

CTG ...

LVP ...

19798 11 + 5955854 - 5955904 1 51

CTG ...

LGA ...

19800 11 - 116083809 - 116083895 1 87

GTG ...

VPE ...

19802 11 - 5082344 - 5082400 1 57

GTG ...

VFM ...

19805 11 - 120543896 - 120543946 1 51

GTG ...

VEE ...

19807 11 + 121605297 - 121605344 1 48

CTG ...

LLA ...

19809 11 + 87205983 - 87206081 1 99

CTG ...

LSL ...

19811 11 - 97163910 - 97163990 1 81

TTG ...

LSF ...

19813 11 - 61174711 - 61174866 1 156

CTG ...

LRS ...

19815 1 + 87264571 - 87264618 1 48

CTG ...

LNR ...

19817 11 + 60537858 - 60538073 1 216

CTG ...

LFS ...

19819 11 - 101294903 - 101295094 1 192

CTG ...

LAL ...

19822 1 + 167367428 - 167367499 1 72

GTG ...

VTI ...

19825 11 + 58954742 - 58954906 1 165

CTG ...

LVV ...

19827 11 - 79248368 - 79248613 1 246

TTG ...

LAR ...

19830 11 - 3250266 - 3250304 1 39

TTG ...

LED ...

19832 11 - 97163910 - 97164017 1 108

CTG ...

LVQ ...

19834 11 + 106282834 - 106283079 1 246

CTG ...

LVE ...

19836 11 - 88955290 - 88955397 1 108

TTG ...

LLM ...

19838 11 - 84512133 - 84512249 1 117

TTG ...

LAP ...

19840 11 + 106261549 - 106261737 1 189

GTG ...

VDP ...

19842 11 + 29130782 - 29130922 1 141

TTG ...

LCP ...

19844 11 - 101294903 - 101295103 1 201

CTG ...

LKE ...

19846 11 + 72447199 - 72447333 1 135

TTG ...

LLA ...

19849 11 + 101285766 - 101285813 1 48

TTG ...

LRA ...

19851 11 + 78320394 - 78320456 1 63

CTG ...

LCS ...

19854 11 + 101283791 - 101283940 1 150

CTG ...

LQS ...

19856 1 + 150413687 - 150413848 1 162

CTG ...

LEQ ...

19859 11 + 29693049 - 29693168 1 120

CTG ...

LEL ...

19861 11 + 72445994 - 72446065 1 72

TTG ...

LNH ...

19863 11 + 17219062 - 17219118 1 57

CTG ...

LQQ ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5