Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

19640 11 + 49846904 - 49846996 1 93

CTG ...

LGA ...

19642 11 + 78539996 - 78540043 1 48

TTG ...

LSL ...

19644 11 + 74770857 - 74770919 1 63

CTG ...

LRK ...

19646 11 + 101564773 - 101564832 1 60

CTG ...

LVR ...

19648 11 + 3333275 - 3333352 1 78

GTG ...

VTK ...

19650 11 + 29741502 - 29741558 1 57

CTG ...

LIS ...

19652 1 + 179678069 - 179678140 1 72

ATG ...

MRK ...

19655 11 - 59836887 - 59836961 1 75

TTG ...

LSH ...

19657 11 + 80383363 - 80383560 1 198

GTG ...

VEN ...

19660 11 - 29246997 - 29247140 1 144

GTG ...

VRA ...

19662 11 + 72677839 - 72677931 1 93

CTG ...

LAD ...

19664 11 + 98950289 - 98950318 1 30

CTG ...

LGV ...

19666 11 + 88049097 - 88049168 1 72

GTG ...

VMY ...

19668 11 + 62883634 - 62883810 1 177

GTG ...

VAS ...

19670 11 + 48849882 - 48849989 1 108

GTG ...

VED ...

19672 11 + 32284330 - 32284362 1 33

ATG ...

MPL ...

19675 11 - 102154509 - 102154661 1 153

CTG ...

LVL ...

19677 11 + 109396101 - 109396160 1 60

GTG ...

VNL ...

19679 1 - 119421346 - 119421387 1 42

CTG ...

LQM ...

19683 11 - 70235998 - 70236192 1 195

GTG ...

VKR ...

19685 11 - 3452205 - 3452300 1 96

CTG ...

LTD ...

19688 11 - 69968434 - 69968478 1 45

ATG ...

MLL ...

19690 11 + 98686009 - 98686095 1 87

GTG ...

VEA ...

19692 1 - 182276815 - 182276865 1 51

ATG ...

MTS ...

19695 11 + 101566223 - 101566414 1 192

GTG ...

VEK ...

19697 11 + 32226635 - 32226679 1 45

TTG ...

LDE ...

19700 11 + 70647628 - 70647693 1 66

CTG ...

LSY ...

19702 11 + 98685496 - 98685702 1 207

GTG ...

VRQ ...

19704 11 + 17262750 - 17262803 1 54

CTG ...

LKT ...

19706 11 + 116214916 - 116215077 1 162

TTG ...

LEQ ...

19708 11 + 88048600 - 88048683 1 84

GTG ...

VEA ...

19710 11 - 50311651 - 50311725 1 75

TTG ...

LRL ...

19712 11 + 117354856 - 117354984 1 129

GTG ...

VNI ...

19714 11 - 106784876 - 106784944 1 69

CTG ...

LSA ...

19716 11 + 50382566 - 50382694 1 129

CTG ...

LKL ...

19718 1 + 59690489 - 59690566 1 78

CTG ...

LNE ...

19721 11 - 100716785 - 100716838 1 54

ATG ...

MQM ...

19723 11 + 117986961 - 117987017 1 57

CTG ...

LGR ...

19726 11 + 48803432 - 48803503 1 72

GTG ...

VSA ...

19728 11 + 58954891 - 58955130 1 240

CTG ...

LAA ...

19731 11 - 4487225 - 4487479 1 255

CTG ...

LNS ...

19733 11 - 70978095 - 70978178 1 84

TTG ...

LVE ...

19735 1 + 135746764 - 135746835 1 72

TTG ...

LPR ...

19737 11 + 106285434 - 106285649 1 216

GTG ...

VTC ...

19739 11 + 117813434 - 117813475 1 42

GTG ...

VET ...

19741 11 - 115491580 - 115491669 1 90

CTG ...

LEQ ...

19744 11 - 105935375 - 105935509 1 135

CTG ...

LVC ...

19746 11 - 97173115 - 97173258 1 144

ATG ...

MTG ...

19748 11 - 115699178 - 115699345 1 168

GTG ...

VSQ ...

19750 11 - 52000317 - 52000448 1 132

GTG ...

VQS ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5