Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

19525 11 - 58933985 - 58934107 1 123

ATG ...

MSW ...

19527 11 + 82783490 - 82783750 1 261

GTG ...

VLP ...

19529 11 + 72448298 - 72448381 1 84

GTG ...

VIQ ...

19531 11 + 105254999 - 105255067 1 69

CTG ...

LER ...

19533 11 + 58918142 - 58918216 1 75

CTG ...

LTL ...

19535 11 - 49712548 - 49712688 1 141

TTG ...

LLS ...

19538 11 + 52403163 - 52403453 1 291

GTG ...

VQR ...

19540 11 + 50378300 - 50378407 1 108

CTG ...

LCG ...

19542 11 - 69920356 - 69920412 1 57

GTG ...

VFP ...

19545 11 - 69970504 - 69970719 1 216

GTG ...

VRV ...

19547 11 + 106281954 - 106281992 1 39

CTG ...

LLA ...

19551 11 - 120404304 - 120404372 1 69

TTG ...

LQV ...

19554 11 - 106784876 - 106784983 1 108

CTG ...

LKD ...

19556 11 + 72444877 - 72444981 1 105

GTG ...

VAW ...

19558 11 + 72447190 - 72447333 1 144

TTG ...

LLS ...

19560 11 + 119270104 - 119270136 1 33

ATG ...

MLP ...

19562 11 - 55450470 - 55450610 1 141

TTG ...

LTC ...

19564 11 - 115608386 - 115608478 1 93

CTG ...

LLL ...

19566 11 - 4482768 - 4482857 1 90

GTG ...

VCK ...

19569 11 - 55395858 - 55395992 1 135

TTG ...

LFS ...

19571 11 - 106213173 - 106213235 1 63

ATG ...

MIL ...

19573 11 + 58954943 - 58955041 1 99

ATG ...

MRP ...

19575 1 + 128252206 - 128252256 1 51

ATG ...

MMS ...

19577 11 + 116657239 - 116657286 1 48

GTG ...

VHH ...

19579 11 + 101120547 - 101120609 1 63

TTG ...

LGS ...

19582 11 + 67662105 - 67662170 1 66

CTG ...

LQK ...

19585 11 + 78304910 - 78305044 1 135

GTG ...

VLQ ...

19587 1 - 181203020 - 181203118 1 99

CTG ...

LED ...

19590 11 - 51997804 - 51997833 1 30

ATG ...

MQL ...

19592 11 + 29733684 - 29733713 1 30

GTG ...

VPA ...

19594 11 + 72448265 - 72448381 1 117

CTG ...

LIL ...

19596 11 - 69601248 - 69601376 1 129

CTG ...

LNV ...

19598 11 + 4174143 - 4174223 1 81

ATG ...

MRK ...

19600 11 + 87737568 - 87737597 1 30

CTG ...

LEE ...

19603 11 - 54994449 - 54994565 1 117

CTG ...

LKS ...

19607 11 + 69939983 - 69940156 1 174

CTG ...

LPH ...

19609 11 - 120151163 - 120151270 1 108

TTG ...

LPA ...

19611 11 + 78254890 - 78255138 1 249

CTG ...

LDD ...

19613 11 + 52406997 - 52407029 1 33

CTG ...

LWS ...

19615 11 + 115580511 - 115580588 1 78

CTG ...

LSN ...

19617 11 - 97184923 - 97184958 1 36

ATG ...

MLM ...

19619 11 - 76233187 - 76233258 1 72

GTG ...

VSL ...

19621 11 + 97703852 - 97703890 1 39

CTG ...

LQT ...

19624 11 + 80389287 - 80389334 1 48

CTG ...

LMP ...

19626 11 + 101564713 - 101564832 1 120

GTG ...

VVE ...

19628 11 + 106286820 - 106287029 1 210

CTG ...

LPE ...

19630 11 - 120580296 - 120580328 1 33

CTG ...

LQR ...

19632 11 - 50943546 - 50943743 1 198

CTG ...

LRT ...

19635 11 - 50307512 - 50307610 1 99

GTG ...

VER ...

19638 11 + 70844863 - 70844910 1 48

CTG ...

LGG ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5