Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

19404 11 + 5100415 - 5100519 1 105

ATG ...

MMY ...

19406 11 - 69605329 - 69605451 1 123

GTG ...

VEG ...

19408 11 + 48849825 - 48849989 1 165

TTG ...

LSR ...

19410 1 - 86547531 - 86547575 1 45

CTG ...

LAR ...

19413 11 - 29247011 - 29247175 1 165

CTG ...

LGE ...

19415 11 + 75194167 - 75194220 1 54

TTG ...

LPP ...

19418 11 + 44557377 - 44557442 1 66

CTG ...

LQS ...

19421 11 + 69998365 - 69998535 1 171

ATG ...

MAG ...

19423 11 + 6416674 - 6416739 1 66

ATG ...

MAQ ...

19425 1 + 155558429 - 155558497 1 69

TTG ...

LER ...

19428 11 + 58954731 - 58954847 1 117

GTG ...

VED ...

19430 11 + 75637479 - 75637589 1 111

CTG ...

LPP ...

19432 11 + 119272906 - 119273019 1 114

CTG ...

LET ...

19434 1 - 93801746 - 93801790 1 45

GTG ...

VWT ...

19438 11 + 85581156 - 85581242 1 87

GTG ...

VLQ ...

19441 11 + 75751932 - 75751973 1 42

TTG ...

LKN ...

19444 11 + 121605300 - 121605344 1 45

TTG ...

LAN ...

19447 11 + 80391847 - 80391876 1 30

CTG ...

LFH ...

19449 11 - 120711718 - 120711747 1 30

ATG ...

MHC ...

19453 11 + 68587196 - 68587336 1 141

CTG ...

LLG ...

19456 11 - 40684662 - 40684793 1 132

GTG ...

VFD ...

19459 11 - 75348208 - 75348246 1 39

CTG ...

LSE ...

19462 11 + 78254974 - 78255138 1 165

CTG ...

LLS ...

19464 11 + 106284618 - 106284842 1 225

GTG ...

VSC ...

19466 11 + 101615790 - 101615936 1 147

CTG ...

LLE ...

19468 11 + 78254944 - 78255138 1 195

GTG ...

VRF ...

19470 11 + 106051761 - 106051832 1 72

ATG ...

MTS ...

19472 11 - 115272145 - 115272240 1 96

GTG ...

VPF ...

19475 11 - 3262360 - 3262656 1 297

GTG ...

VAK ...

19477 11 - 55419752 - 55419832 1 81

CTG ...

LPP ...

19479 11 + 72444769 - 72444981 1 213

TTG ...

LTM ...

19481 11 + 29693149 - 29693235 1 87

GTG ...

VAR ...

19483 11 + 74770866 - 74770919 1 54

ATG ...

MAA ...

19485 11 - 21563972 - 21564175 1 204

CTG ...

LDV ...

19488 11 + 70940451 - 70940483 1 33

CTG ...

LTD ...

19490 11 - 101119620 - 101119799 1 180

TTG ...

LWL ...

19492 11 - 120137853 - 120137975 1 123

CTG ...

LSS ...

19496 11 + 22994319 - 22994417 1 99

GTG ...

VTI ...

19498 1 - 10033287 - 10033322 1 36

TTG ...

LIQ ...

19500 11 + 72442758 - 72442910 1 153

CTG ...

LMK ...

19502 11 - 96913657 - 96913791 1 135

CTG ...

LVD ...

19504 11 - 55450501 - 55450605 1 105

CTG ...

LPN ...

19507 11 - 85196077 - 85196232 1 156

TTG ...

LTV ...

19509 11 - 98582780 - 98582818 1 39

ATG ...

MTK ...

19512 11 - 61159201 - 61159263 1 63

GTG ...

VVN ...

19514 11 + 120488339 - 120488434 1 96

CTG ...

LPQ ...

19516 11 - 98707114 - 98707230 1 117

CTG ...

LDM ...

19518 11 - 50943546 - 50943707 1 162

ATG ...

MAP ...

19520 11 + 54522984 - 54523019 1 36

CTG ...

LAY ...

19522 11 + 50233557 - 50233700 1 144

CTG ...

LEK ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5