Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

19289 1 + 185345345 - 185345500 1 156

CTG ...

LIE ...

19292 11 + 87201371 - 87201634 1 264

GTG ...

VPS ...

19295 11 + 119943120 - 119943179 1 60

TTG ...

LLQ ...

19298 11 - 69605491 - 69605535 1 45

GTG ...

VRG ...

19300 11 + 120488327 - 120488434 1 108

CTG ...

LVE ...

19303 1 + 172319361 - 172319408 1 48

CTG ...

LAT ...

19306 11 - 70958262 - 70958384 1 123

CTG ...

LVT ...

19308 11 + 116214850 - 116215077 1 228

GTG ...

VVR ...

19310 11 - 3256501 - 3256695 1 195

TTG ...

LIL ...

19312 11 + 82790534 - 82790701 1 168

GTG ...

VVE ...

19314 11 + 99041272 - 99041343 1 72

CTG ...

LLG ...

19316 11 - 85214237 - 85214329 1 93

GTG ...

VML ...

19318 11 + 29130854 - 29130922 1 69

TTG ...

LQM ...

19320 11 + 4167873 - 4167914 1 42

GTG ...

VEQ ...

19322 11 - 11954735 - 11954791 1 57

GTG ...

VAR ...

19325 11 - 106266507 - 106266581 1 75

GTG ...

VAS ...

19327 1 + 75145686 - 75145889 1 204

GTG ...

VKK ...

19329 11 + 72447169 - 72447333 1 165

GTG ...

VEV ...

19331 11 + 48800378 - 48800467 1 90

GTG ...

VVA ...

19334 11 + 106285605 - 106285649 1 45

CTG ...

LVR ...

19336 11 + 72447232 - 72447333 1 102

GTG ...

VVR ...

19338 11 - 84916255 - 84916308 1 54

GTG ...

VVC ...

19340 11 + 80248469 - 80248564 1 96

CTG ...

LEY ...

19342 11 - 116106001 - 116106129 1 129

CTG ...

LDS ...

19344 11 + 114675616 - 114675684 1 69

CTG ...

LRL ...

19346 11 - 102404521 - 102404610 1 90

TTG ...

LSA ...

19349 1 - 36162157 - 36162351 1 195

GTG ...

VAA ...

19352 11 + 78320406 - 78320456 1 51

CTG ...

LQE ...

19354 11 + 78339388 - 78339492 1 105

ATG ...

MCL ...

19356 11 - 97164932 - 97165054 1 123

GTG ...

VFG ...

19358 1 + 45819566 - 45819721 1 156

GTG ...

VFV ...

19361 11 - 48816668 - 48816811 1 144

GTG ...

VGW ...

19363 11 - 97171569 - 97171646 1 78

CTG ...

LWA ...

19365 11 + 67682638 - 67682757 1 120

CTG ...

LER ...

19367 11 + 72443823 - 72443918 1 96

CTG ...

LAL ...

19369 11 + 58954748 - 58954906 1 159

GTG ...

VAS ...

19371 11 - 51997804 - 51997881 1 78

CTG ...

LWG ...

19373 11 - 51626995 - 51627078 1 84

CTG ...

LDF ...

19375 11 + 69998350 - 69998535 1 186

GTG ...

VQQ ...

19377 11 - 116295135 - 116295287 1 153

GTG ...

VSA ...

19380 11 + 105254990 - 105255067 1 78

CTG ...

LER ...

19382 11 - 102404022 - 102404117 1 96

TTG ...

LVK ...

19384 11 + 72677825 - 72677875 1 51

GTG ...

VSF ...

19388 11 + 106261948 - 106262052 1 105

TTG ...

LAR ...

19390 11 + 72448241 - 72448381 1 141

GTG ...

VTK ...

19392 11 + 78304745 - 78305044 1 300

GTG ...

VEM ...

19394 11 + 88047725 - 88047760 1 36

GTG ...

VVP ...

19396 11 - 59827801 - 59827923 1 123

CTG ...

LCY ...

19398 11 - 75316101 - 75316175 1 75

CTG ...

LLQ ...

19401 11 + 75756849 - 75756926 1 78

TTG ...

LPQ ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5