Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

19172 11 - 97167625 - 97167666 1 42

ATG ...

MLC ...

19174 11 + 75633464 - 75633580 1 117

TTG ...

LQE ...

19176 11 - 50298099 - 50298158 1 60

TTG ...

LPV ...

19178 11 - 29246997 - 29247125 1 129

CTG ...

LRK ...

19180 11 - 3648501 - 3648635 1 135

GTG ...

VAG ...

19182 11 - 120550721 - 120550756 1 36

CTG ...

LLC ...

19184 1 + 70299593 - 70299772 1 180

TTG ...

LAT ...

19187 11 + 114686415 - 114686570 1 156

TTG ...

LAA ...

19189 11 + 4728585 - 4728644 1 60

ATG ...

MQL ...

19191 11 + 107994520 - 107994621 1 102

TTG ...

LTA ...

19193 1 - 75501951 - 75502229 1 279

CTG ...

LED ...

19196 11 - 60261037 - 60261108 1 72

CTG ...

LQA ...

19199 11 - 70014170 - 70014376 1 207

GTG ...

VND ...

19201 1 + 36104078 - 36104221 1 144

CTG ...

LER ...

19204 11 - 51602509 - 51602694 1 186

GTG ...

VKS ...

19206 11 + 49883227 - 49883289 1 63

CTG ...

LAS ...

19209 11 - 69658562 - 69658618 1 57

GTG ...

VAL ...

19211 1 + 191596896 - 191597024 1 129

CTG ...

LLQ ...

19214 11 + 115568373 - 115568456 1 84

GTG ...

VSK ...

19216 11 - 115699324 - 115699365 1 42

CTG ...

LIQ ...

19218 11 - 84512133 - 84512267 1 135

GTG ...

VSS ...

19220 11 - 58933985 - 58934062 1 78

CTG ...

LCQ ...

19222 11 - 50311722 - 50311766 1 45

GTG ...

VVT ...

19224 11 + 3964006 - 3964068 1 63

CTG ...

LAA ...

19226 11 + 101285727 - 101285813 1 87

CTG ...

LVY ...

19228 11 + 58954826 - 58954906 1 81

GTG ...

VCT ...

19231 11 - 51605457 - 51605519 1 63

CTG ...

LDD ...

19233 1 - 55019174 - 55019338 1 165

GTG ...

VGL ...

19235 11 + 101615814 - 101615936 1 123

CTG ...

LFK ...

19237 11 + 78320355 - 78320456 1 102

CTG ...

LAE ...

19239 11 - 100710718 - 100710819 1 102

CTG ...

LLC ...

19242 11 + 106284582 - 106284842 1 261

GTG ...

VPS ...

19244 11 + 115581762 - 115581863 1 102

TTG ...

LAM ...

19247 11 - 78507710 - 78507775 1 66

GTG ...

VVG ...

19250 11 + 60932152 - 60932196 1 45

ATG ...

MSA ...

19252 11 + 59775531 - 59775587 1 57

CTG ...

LTV ...

19254 1 - 135430260 - 135430355 1 96

GTG ...

VDT ...

19257 11 + 69991619 - 69991762 1 144

CTG ...

LFV ...

19260 11 + 101470767 - 101470808 1 42

TTG ...

LAV ...

19263 11 - 54756425 - 54756547 1 123

TTG ...

LSE ...

19265 11 - 60241814 - 60241852 1 39

CTG ...

LHL ...

19268 11 - 59809656 - 59809775 1 120

GTG ...

VAT ...

19270 11 - 115609425 - 115609613 1 189

GTG ...

VIV ...

19272 11 + 29218471 - 29218551 1 81

TTG ...

LVD ...

19275 1 - 54998034 - 54998063 1 30

ATG ...

MLS ...

19277 11 - 69980187 - 69980294 1 108

GTG ...

VTT ...

19279 1 - 165187965 - 165188042 1 78

CTG ...

LWV ...

19282 11 + 96035036 - 96035071 1 36

CTG ...

LAP ...

19285 11 + 69995851 - 69996057 1 207

GTG ...

VRE ...

19287 11 + 59204672 - 59204761 1 90

ATG ...

MLA ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5