Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

19056 11 - 3264749 - 3264829 1 81

TTG ...

LLN ...

19059 11 - 99022825 - 99022935 1 111

TTG ...

LSI ...

19061 1 + 134407064 - 134407138 1 75

CTG ...

LPE ...

19064 11 + 101566244 - 101566414 1 171

TTG ...

LQE ...

19066 1 - 181919375 - 181919419 1 45

CTG ...

LEF ...

19069 1 + 153433199 - 153433393 1 195

TTG ...

LSS ...

19071 11 + 80389775 - 80389825 1 51

TTG ...

LHH ...

19073 11 - 101098163 - 101098456 1 294

CTG ...

LPA ...

19076 11 - 4704119 - 4704316 1 198

GTG ...

VRQ ...

19078 11 + 120605290 - 120605364 1 75

CTG ...

LVM ...

19080 11 - 50300960 - 50301001 1 42

GTG ...

VSQ ...

19082 11 + 106285452 - 106285649 1 198

GTG ...

VLT ...

19084 11 + 106262587 - 106262724 1 138

CTG ...

LDI ...

19086 11 + 107994388 - 107994621 1 234

CTG ...

LSQ ...

19088 11 - 70235998 - 70236180 1 183

GTG ...

VYE ...

19090 11 + 114686466 - 114686570 1 105

GTG ...

VCT ...

19092 11 + 106284789 - 106284842 1 54

CTG ...

LGP ...

19094 11 + 97834126 - 97834191 1 66

GTG ...

VGT ...

19096 1 + 37430238 - 37430342 1 105

GTG ...

VAV ...

19099 11 + 69913185 - 69913331 1 147

GTG ...

VRP ...

19101 11 - 96819661 - 96819744 1 84

TTG ...

LTL ...

19103 11 + 4167729 - 4167914 1 186

CTG ...

LDV ...

19106 11 - 50202790 - 50202987 1 198

CTG ...

LTP ...

19108 11 + 68752008 - 68752043 1 36

GTG ...

VKN ...

19110 11 + 3333239 - 3333352 1 114

CTG ...

LPW ...

19112 11 + 96789265 - 96789357 1 93

CTG ...

LGA ...

19114 11 - 106267330 - 106267380 1 51

CTG ...

LLV ...

19117 11 + 6416645 - 6416674 1 30

GTG ...

VPK ...

19120 11 - 51626995 - 51627090 1 96

TTG ...

LNV ...

19122 1 + 135746752 - 135746835 1 84

ATG ...

MHP ...

19124 11 + 106261576 - 106261737 1 162

GTG ...

VEK ...

19126 11 + 69936908 - 69937012 1 105

CTG ...

LGT ...

19128 11 + 29130773 - 29130922 1 150

CTG ...

LCC ...

19131 11 - 120730702 - 120730875 1 174

GTG ...

VDL ...

19133 11 + 86201459 - 86201494 1 36

ATG ...

MGV ...

19136 11 - 53430420 - 53430635 1 216

TTG ...

LSP ...

19138 11 - 86726251 - 86726316 1 66

ATG ...

MLS ...

19141 11 + 53350915 - 53350950 1 36

ATG ...

MER ...

19143 11 - 58938601 - 58938831 1 231

CTG ...

LRP ...

19146 11 - 6193150 - 6193335 1 186

GTG ...

VQE ...

19149 11 + 78347233 - 78347364 1 132

CTG ...

LRK ...

19151 11 - 116488101 - 116488154 1 54

TTG ...

LGK ...

19153 1 + 191822207 - 191822368 1 162

GTG ...

VSE ...

19156 1 - 84730502 - 84730678 1 177

CTG ...

LPF ...

19159 11 - 61166636 - 61166776 1 141

CTG ...

LMY ...

19161 11 + 60538936 - 60539199 1 264

CTG ...

LVI ...

19163 11 - 97164720 - 97164815 1 96

GTG ...

VDY ...

19165 11 - 69975184 - 69975213 1 30

CTG ...

LEK ...

19167 1 + 160197012 - 160197143 1 132

TTG ...

LKR ...

19170 11 + 60539152 - 60539199 1 48

GTG ...

VLS ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5