Metam
ORF

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ORF Browser

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

21406 11 + 31975080 - 31975139 1 60

TTG ...

LQR ...

21408 1 + 155687032 - 155687103 1 72

TTG ...

LPE ...

21411 11 - 6274721 - 6274843 1 123

TTG ...

LRR ...

21413 11 - 84510149 - 84510361 1 213

CTG ...

LEE ...

21415 11 + 67586675 - 67586743 1 69

CTG ...

LLA ...

21417 11 - 70652124 - 70652213 1 90

CTG ...

LLM ...

21419 1 - 135406931 - 135407041 1 111

GTG ...

VQQ ...

21422 1 - 172200328 - 172200522 1 195

CTG ...

LEQ ...

21424 11 - 6274375 - 6274479 1 105

GTG ...

VGQ ...

21426 11 - 115699242 - 115699337 1 96

GTG ...

VCK ...

21428 11 + 115605982 - 115606185 1 204

GTG ...

VKR ...

21431 11 + 58954987 - 58955130 1 144

CTG ...

LQL ...

21433 11 + 69940031 - 69940156 1 126

CTG ...

LAA ...

21436 11 + 119268073 - 119268222 1 150

CTG ...

LEG ...

21438 11 - 115268513 - 115268728 1 216

GTG ...

VKR ...

21441 11 + 80383348 - 80383560 1 213

CTG ...

LVA ...

21443 1 - 181816858 - 181816917 1 60

CTG ...

LAW ...

21445 11 + 53583218 - 53583250 1 33

TTG ...

LLK ...

21447 1 - 119617360 - 119617389 1 30

ATG ...

MVL ...

21450 11 - 70239626 - 70239703 1 78

CTG ...

LAA ...

21452 11 - 84916095 - 84916148 1 54

CTG ...

LSV ...

21454 1 + 45822949 - 45822978 1 30

CTG ...

LLL ...

21456 11 + 69940631 - 69940759 1 129

GTG ...

VGM ...

21458 1 + 75145680 - 75145889 1 210

GTG ...

VDV ...

21460 11 - 50297054 - 50297104 1 51

GTG ...

VLL ...

21462 11 - 61737021 - 61737053 1 33

TTG ...

LQS ...

21465 1 - 178333011 - 178333055 1 45

GTG ...

VRQ ...

21467 11 + 48800381 - 48800467 1 87

GTG ...

VAA ...

21469 11 + 94947634 - 94947783 1 150

CTG ...

LAL ...

21472 11 + 72443503 - 72443700 1 198

CTG ...

LPK ...

21474 1 + 135745343 - 135745387 1 45

ATG ...

MGQ ...

21476 11 + 88049112 - 88049168 1 57

CTG ...

LMF ...

21478 11 - 115491267 - 115491365 1 99

GTG ...

VAS ...

21480 11 - 60906878 - 60906922 1 45

ATG ...

MLT ...

21482 11 - 60789558 - 60789671 1 114

CTG ...

LGT ...

21484 11 + 101567237 - 101567266 1 30

CTG ...

LPA ...

21486 11 + 72607562 - 72607639 1 78

GTG ...

VAA ...

21488 11 - 120109397 - 120109516 1 120

GTG ...

VQR ...

21491 11 - 51604751 - 51604783 1 33

GTG ...

VSL ...

21493 11 - 101302166 - 101302282 1 117

CTG ...

LVL ...

21495 11 + 78251042 - 78251272 1 231

GTG ...

VTS ...

21497 11 - 106213173 - 106213229 1 57

TTG ...

LLS ...

21499 1 + 65195736 - 65195783 1 48

TTG ...

LKR ...

21502 11 - 115609247 - 115609381 1 135

CTG ...

LQK ...

21504 11 + 5105846 - 5105977 1 132

GTG ...

VAL ...

21506 11 + 82783493 - 82783750 1 258

CTG ...

LPS ...

21508 11 - 69602705 - 69602746 1 42

ATG ...

MVT ...

21510 11 + 72445970 - 72446065 1 96

CTG ...

LVQ ...

21512 11 + 119274024 - 119274185 1 162

CTG ...

LST ...

21514 11 - 21562823 - 21562951 1 129

CTG ...

LTA ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5