Metam
ORF

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ORF Browser

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

18710 11 + 31081393 - 31081626 1 234

TTG ...

LKY ...

18712 11 + 5099795 - 5099902 1 108

CTG ...

LNA ...

18714 11 + 72444850 - 72444981 1 132

TTG ...

LNA ...

18716 11 - 50297054 - 50297119 1 66

ATG ...

MLK ...

18718 11 + 78314364 - 78314501 1 138

CTG ...

LSW ...

18720 11 + 109653792 - 109653878 1 87

CTG ...

LAV ...

18722 11 + 101071914 - 101072057 1 144

CTG ...

LTQ ...

18724 11 - 5060791 - 5060994 1 204

CTG ...

LDA ...

18727 11 + 106283007 - 106283057 1 51

TTG ...

LCR ...

18729 11 + 98685515 - 98685547 1 33

CTG ...

LFP ...

18731 11 - 101119620 - 101119769 1 150

CTG ...

LKG ...

18733 11 - 72211845 - 72212012 1 168

ATG ...

MRS ...

18736 11 - 72214159 - 72214209 1 51

CTG ...

LEI ...

18738 11 - 52000317 - 52000454 1 138

TTG ...

LFV ...

18740 11 - 3648398 - 3648625 1 228

CTG ...

LAW ...

18742 11 + 69939932 - 69940156 1 225

ATG ...

MPL ...

18745 11 - 97181738 - 97181767 1 30

CTG ...

LVL ...

18747 11 + 54522978 - 54523019 1 42

GTG ...

VGL ...

18750 11 + 106286904 - 106287029 1 126

CTG ...

LNY ...

18752 1 + 86592333 - 86592389 1 57

CTG ...

LFA ...

18755 11 - 104425027 - 104425227 1 201

CTG ...

LSL ...

18758 11 - 96911534 - 96911638 1 105

GTG ...

VYE ...

18760 11 + 83336836 - 83336865 1 30

TTG ...

LDG ...

18763 11 + 70525431 - 70525499 1 69

CTG ...

LHR ...

18766 11 + 106262213 - 106262329 1 117

CTG ...

LEG ...

18768 11 + 119264341 - 119264514 1 174

CTG ...

LHR ...

18770 11 + 4893125 - 4893184 1 60

TTG ...

LVR ...

18773 11 + 5955842 - 5955904 1 63

GTG ...

VAA ...

18775 11 + 117356631 - 117356747 1 117

GTG ...

VVG ...

18777 11 - 103687521 - 103687577 1 57

CTG ...

LEI ...

18779 11 - 6444333 - 6444362 1 30

GTG ...

VGV ...

18781 11 + 55109511 - 55109558 1 48

CTG ...

LPL ...

18783 11 - 60789144 - 60789245 1 102

CTG ...

LAG ...

18785 11 + 101580669 - 101580758 1 90

CTG ...

LLR ...

18787 11 - 53267052 - 53267108 1 57

CTG ...

LDQ ...

18789 11 + 59208448 - 59208492 1 45

GTG ...

VAC ...

18791 11 + 58954885 - 58955130 1 246

GTG ...

VYL ...

18793 1 - 161093677 - 161093781 1 105

CTG ...

LAV ...

18796 11 - 96827727 - 96827840 1 114

TTG ...

LCQ ...

18800 11 + 76218272 - 76218535 1 264

ATG ...

MSQ ...

18803 11 + 115403805 - 115404008 1 204

CTG ...

LSR ...

18806 1 - 178333543 - 178333578 1 36

CTG ...

LVT ...

18808 11 + 50382976 - 50383077 1 102

GTG ...

VAL ...

18810 11 - 120411652 - 120411717 1 66

CTG ...

LED ...

18812 11 + 4730240 - 4730275 1 36

CTG ...

LQE ...

18815 11 - 74679554 - 74679607 1 54

ATG ...

MIT ...

18817 11 + 72443745 - 72443918 1 174

GTG ...

VNI ...

18819 11 + 119264455 - 119264514 1 60

GTG ...

VLQ ...

18821 11 + 78305198 - 78305380 1 183

TTG ...

LNS ...

18823 11 + 58920387 - 58920629 1 243

GTG ...

VEW ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5