Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

18825 11 - 106254778 - 106254831 1 54

CTG ...

LQV ...

18828 11 + 117352217 - 117352303 1 87

GTG ...

VQP ...

18830 11 - 95310031 - 95310099 1 69

CTG ...

LVL ...

18832 11 + 3291772 - 3291888 1 117

GTG ...

VCG ...

18834 1 + 151356151 - 151356183 1 33

CTG ...

LIT ...

18836 11 + 98693383 - 98693541 1 159

GTG ...

VHK ...

18838 11 + 93923160 - 93923315 1 156

TTG ...

LRY ...

18840 11 + 101580723 - 101580758 1 36

GTG ...

VNN ...

18842 11 + 94947625 - 94947783 1 159

CTG ...

LDP ...

18845 11 - 3252640 - 3252681 1 42

TTG ...

LEK ...

18848 11 - 116106001 - 116106243 1 243

CTG ...

LAF ...

18850 11 + 102190094 - 102190147 1 54

GTG ...

VLW ...

18852 11 + 117115298 - 117115345 1 48

ATG ...

MNA ...

18855 11 + 72441483 - 72441581 1 99

TTG ...

LDF ...

18858 11 + 101283822 - 101283896 1 75

TTG ...

LST ...

18860 11 - 98707114 - 98707293 1 180

CTG ...

LKE ...

18862 11 - 62527488 - 62527550 1 63

CTG ...

LQE ...

18864 11 - 118303850 - 118303888 1 39

CTG ...

LSH ...

18867 11 - 115699242 - 115699355 1 114

GTG ...

VAL ...

18870 11 + 69940637 - 69940759 1 123

ATG ...

MER ...

18872 11 - 70944088 - 70944228 1 141

GTG ...

VLH ...

18874 11 + 119603000 - 119603041 1 42

ATG ...

MLG ...

18876 11 - 55409896 - 55409976 1 81

CTG ...

LDL ...

18878 11 + 82783609 - 82783692 1 84

GTG ...

VRW ...

18880 11 + 98690563 - 98690667 1 105

TTG ...

LYD ...

18882 11 - 119296063 - 119296098 1 36

GTG ...

VSQ ...

18885 1 - 175603921 - 175604025 1 105

GTG ...

VVG ...

18888 11 + 117813284 - 117813475 1 192

CTG ...

LAS ...

18890 11 - 84509612 - 84509779 1 168

TTG ...

LEG ...

18893 11 + 72266886 - 72266918 1 33

ATG ...

MQG ...

18896 11 - 104425027 - 104425206 1 180

CTG ...

LRW ...

18898 11 + 6342550 - 6342627 1 78

ATG ...

MRP ...

18901 11 + 87201572 - 87201634 1 63

TTG ...

LGM ...

18903 11 - 50297054 - 50297116 1 63

CTG ...

LKK ...

18905 11 + 98690936 - 98691055 1 120

CTG ...

LEY ...

18907 11 + 80209174 - 80209290 1 117

CTG ...

LAG ...

18910 11 - 101302166 - 101302225 1 60

ATG ...

MGT ...

18912 11 - 50311651 - 50311701 1 51

ATG ...

MTR ...

18915 11 + 58954927 - 58955130 1 204

CTG ...

LEL ...

18917 11 + 106261960 - 106262052 1 93

GTG ...

VAH ...

18919 11 - 59826364 - 59826417 1 54

CTG ...

LPW ...

18923 11 + 115583760 - 115583822 1 63

CTG ...

LAL ...

18925 11 + 121503760 - 121503795 1 36

CTG ...

LLL ...

18927 11 + 69995863 - 69996057 1 195

GTG ...

VVE ...

18929 11 - 29247011 - 29247100 1 90

ATG ...

MGG ...

18931 11 - 3648501 - 3648548 1 48

TTG ...

LVV ...

18933 11 + 20201566 - 20201628 1 63

TTG ...

LGR ...

18935 11 - 101413890 - 101414060 1 171

CTG ...

LRV ...

18937 11 - 69603410 - 69603466 1 57

CTG ...

LTI ...

18939 11 - 102999743 - 102999802 1 60

TTG ...

LAL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5