Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

18592 11 - 43424626 - 43424877 1 252

TTG ...

LQV ...

18595 11 - 102870164 - 102870208 1 45

CTG ...

LME ...

18598 11 + 105267205 - 105267246 1 42

GTG ...

VKL ...

18600 11 + 78263917 - 78264045 1 129

ATG ...

MWH ...

18602 11 + 119273988 - 119274185 1 198

GTG ...

VAP ...

18604 11 + 80030049 - 80030090 1 42

GTG ...

VMK ...

18607 11 + 115582990 - 115583049 1 60

CTG ...

LLT ...

18610 11 - 52000317 - 52000406 1 90

CTG ...

LRR ...

18612 11 + 45893879 - 45893947 1 69

ATG ...

MRK ...

18614 1 + 90214206 - 90214235 1 30

TTG ...

LGA ...

18617 11 - 69658562 - 69658672 1 111

TTG ...

LGA ...

18620 1 - 54987334 - 54987489 1 156

CTG ...

LFH ...

18622 11 - 94293118 - 94293246 1 129

GTG ...

VKS ...

18625 11 + 61487775 - 61487984 1 210

GTG ...

VAR ...

18627 11 + 3291838 - 3291888 1 51

GTG ...

VGK ...

18629 11 + 4160417 - 4160476 1 60

GTG ...

VIF ...

18631 11 + 60553751 - 60553906 1 156

CTG ...

LSS ...

18633 11 + 20224736 - 20224900 1 165

CTG ...

LRL ...

18635 11 + 78251099 - 78251272 1 174

GTG ...

VCE ...

18637 11 + 117813281 - 117813475 1 195

GTG ...

VLA ...

18640 11 + 98685541 - 98685702 1 162

GTG ...

VLR ...

18642 11 - 88955290 - 88955349 1 60

CTG ...

LSR ...

18645 11 - 115491114 - 115491170 1 57

CTG ...

LLK ...

18648 11 + 69997810 - 69997842 1 33

ATG ...

MLV ...

18650 11 + 99041308 - 99041343 1 36

GTG ...

VAR ...

18652 11 + 117077289 - 117077330 1 42

GTG ...

VQP ...

18655 11 + 78315053 - 78315112 1 60

GTG ...

VKD ...

18657 11 + 75756861 - 75756926 1 66

ATG ...

MTG ...

18659 11 - 76233187 - 76233315 1 129

TTG ...

LPD ...

18661 11 + 120605293 - 120605364 1 72

GTG ...

VMT ...

18663 11 - 29247011 - 29247265 1 255

TTG ...

LWC ...

18665 11 + 114675622 - 114675684 1 63

CTG ...

LQR ...

18667 11 - 94297744 - 94297857 1 114

TTG ...

LIV ...

18669 11 + 115163476 - 115163529 1 54

GTG ...

VSP ...

18671 11 + 72444901 - 72444981 1 81

CTG ...

LQP ...

18673 11 - 78080033 - 78080191 1 159

CTG ...

LAS ...

18675 11 + 45909042 - 45909287 1 246

CTG ...

LGG ...

18677 11 - 69616671 - 69616853 1 183

GTG ...

VEL ...

18679 11 + 58922270 - 58922551 1 282

CTG ...

LSR ...

18681 11 - 88955290 - 88955334 1 45

GTG ...

VAA ...

18684 1 - 44087839 - 44087886 1 48

CTG ...

LYC ...

18687 11 - 55399129 - 55399284 1 156

CTG ...

LRM ...

18689 11 + 59204687 - 59204761 1 75

CTG ...

LCS ...

18694 11 + 100571613 - 100571792 1 180

TTG ...

LGD ...

18697 11 + 106051875 - 106051970 1 96

ATG ...

MKT ...

18699 11 + 3291676 - 3291888 1 213

GTG ...

VAC ...

18701 11 + 80394502 - 80394546 1 45

TTG ...

LIH ...

18703 11 - 96050252 - 96050311 1 60

CTG ...

LKW ...

18705 11 + 119603003 - 119603041 1 39

CTG ...

LGL ...

18708 11 - 3648398 - 3648691 1 294

TTG ...

LAA ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5