Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

18104 11 + 20201551 - 20201628 1 78

CTG ...

LWR ...

18106 11 - 118303769 - 118303843 1 75

CTG ...

LDG ...

18108 1 - 93725153 - 93725260 1 108

CTG ...

LSD ...

18111 11 - 50297054 - 50297107 1 54

ATG ...

MVL ...

18113 11 + 53415411 - 53415515 1 105

GTG ...

VMG ...

18115 1 - 135111298 - 135111378 1 81

CTG ...

LLA ...

18118 1 - 60097640 - 60097699 1 60

GTG ...

VEI ...

18121 11 + 69588655 - 69588771 1 117

GTG ...

VEG ...

18124 11 - 70978095 - 70978157 1 63

CTG ...

LEH ...

18126 11 + 98687735 - 98687863 1 129

CTG ...

LDL ...

18128 11 - 51606732 - 51606767 1 36

GTG ...

VAA ...

18130 11 - 30943687 - 30943755 1 69

CTG ...

LTD ...

18133 11 - 78222327 - 78222458 1 132

TTG ...

LRQ ...

18136 11 + 78255103 - 78255138 1 36

TTG ...

LLR ...

18138 11 + 29733701 - 29733844 1 144

CTG ...

LLS ...

18140 1 - 118305230 - 118305262 1 33

TTG ...

LWY ...

18143 11 - 50311651 - 50311707 1 57

ATG ...

MMM ...

18148 11 + 78305168 - 78305380 1 213

TTG ...

LSR ...

18150 11 - 118354957 - 118355013 1 57

CTG ...

LQL ...

18152 11 + 106262596 - 106262724 1 129

TTG ...

LKI ...

18154 11 + 35121298 - 35121387 1 90

ATG ...

MRS ...

18157 11 + 5569735 - 5569836 1 102

TTG ...

LWA ...

18160 11 - 52000317 - 52000394 1 78

GTG ...

VGG ...

18163 11 - 106213173 - 106213220 1 48

TTG ...

LRT ...

18165 11 + 101615793 - 101615936 1 144

CTG ...

LEL ...

18168 11 - 70978424 - 70978537 1 114

ATG ...

MRP ...

18170 11 - 104425027 - 104425185 1 159

CTG ...

LTQ ...

18173 11 + 4212807 - 4212914 1 108

CTG ...

LKA ...

18176 11 - 96911534 - 96911671 1 138

CTG ...

LRY ...

18179 11 + 119272921 - 119273019 1 99

GTG ...

VLS ...

18181 11 + 98686027 - 98686095 1 69

CTG ...

LLM ...

18183 11 + 116215024 - 116215077 1 54

CTG ...

LEP ...

18185 11 - 98707114 - 98707179 1 66

CTG ...

LLT ...

18187 11 + 69915152 - 69915244 1 93

CTG ...

LTS ...

18190 11 + 97712485 - 97712535 1 51

GTG ...

VDR ...

18193 11 - 70237512 - 70237574 1 63

TTG ...

LTM ...

18195 11 + 106261558 - 106261737 1 180

TTG ...

LVS ...

18200 11 + 53583917 - 53584033 1 117

TTG ...

LVD ...

18202 11 - 69601248 - 69601391 1 144

GTG ...

VAV ...

18204 1 + 125585097 - 125585237 1 141

CTG ...

LLL ...

18207 11 - 101417096 - 101417149 1 54

ATG ...

MWF ...

18210 11 - 50307512 - 50307556 1 45

GTG ...

VYM ...

18212 11 - 100705238 - 100705429 1 192

CTG ...

LKT ...

18214 11 + 80395399 - 80395515 1 117

GTG ...

VVI ...

18217 11 - 118303769 - 118303849 1 81

GTG ...

VPL ...

18219 11 - 50307512 - 50307625 1 114

TTG ...

LVQ ...

18221 11 + 50384689 - 50384727 1 39

GTG ...

VVM ...

18223 11 + 23256194 - 23256229 1 36

CTG ...

LRS ...

18226 11 + 101580657 - 101580758 1 102

CTG ...

LNL ...

18229 11 - 116852000 - 116852200 1 201

CTG ...

LPE ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5