Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

18232 11 + 78540967 - 78541002 1 36

CTG ...

LIA ...

18234 11 + 78320373 - 78320456 1 84

GTG ...

VLQ ...

18236 11 + 74770878 - 74770919 1 42

TTG ...

LER ...

18239 11 + 4212144 - 4212251 1 108

CTG ...

LDM ...

18241 11 - 102155694 - 102155852 1 159

TTG ...

LCA ...

18243 11 - 69601498 - 69601560 1 63

CTG ...

LMY ...

18245 11 + 57530060 - 57530089 1 30

CTG ...

LVE ...

18247 11 + 72448352 - 72448381 1 30

CTG ...

LHK ...

18249 11 + 72443742 - 72443918 1 177

CTG ...

LVN ...

18251 11 + 102190019 - 102190147 1 129

CTG ...

LGD ...

18254 1 - 184819221 - 184819253 1 33

GTG ...

VGD ...

18257 11 + 57528086 - 57528187 1 102

ATG ...

MWL ...

18259 11 + 78320003 - 78320077 1 75

GTG ...

VPL ...

18262 11 + 58051104 - 58051181 1 78

ATG ...

MPG ...

18264 11 + 87201530 - 87201634 1 105

CTG ...

LTT ...

18266 11 - 62538852 - 62538944 1 93

CTG ...

LGE ...

18269 11 - 105935375 - 105935533 1 159

CTG ...

LAN ...

18272 11 + 69995866 - 69996057 1 192

GTG ...

VEG ...

18275 11 - 43425563 - 43425619 1 57

TTG ...

LAS ...

18278 1 + 91526023 - 91526136 1 114

GTG ...

VDA ...

18280 11 + 5100418 - 5100519 1 102

ATG ...

MYE ...

18283 11 - 69968426 - 69968464 1 39

GTG ...

VDP ...

18286 11 + 107994550 - 107994621 1 72

TTG ...

LPK ...

18288 1 - 155794521 - 155794634 1 114

GTG ...

VQT ...

18291 1 + 186968351 - 186968533 1 183

TTG ...

LRN ...

18294 11 + 78538866 - 78539018 1 153

CTG ...

LHF ...

18296 11 + 106284798 - 106284842 1 45

GTG ...

VEQ ...

18301 11 - 120730702 - 120730839 1 138

CTG ...

LGG ...

18303 11 - 115490599 - 115490658 1 60

CTG ...

LLS ...

18308 11 + 31101147 - 31101242 1 96

CTG ...

LQN ...

18310 1 - 164302251 - 164302532 1 282

GTG ...

VEV ...

18313 11 - 21323190 - 21323261 1 72

CTG ...

LEL ...

18316 11 - 21558467 - 21558505 1 39

GTG ...

VSL ...

18318 11 - 6444333 - 6444416 1 84

CTG ...

LAA ...

18320 11 - 51606771 - 51606800 1 30

GTG ...

VYG ...

18322 11 + 58331350 - 58331523 1 174

GTG ...

VLL ...

18324 11 - 50301810 - 50301869 1 60

ATG ...

MKT ...

18326 1 + 87403702 - 87403866 1 165

GTG ...

VGR ...

18329 11 + 98682670 - 98682711 1 42

GTG ...

VRV ...

18331 11 - 70958262 - 70958324 1 63

CTG ...

LYI ...

18334 11 + 72266531 - 72266572 1 42

TTG ...

LNL ...

18336 11 + 82783600 - 82783692 1 93

CTG ...

LAP ...

18338 11 - 61162770 - 61162937 1 168

CTG ...

LTH ...

18342 11 + 69998362 - 69998535 1 174

GTG ...

VMA ...

18344 11 + 75637512 - 75637589 1 78

CTG ...

LEH ...

18347 11 - 102405008 - 102405070 1 63

GTG ...

VKI ...

18350 11 + 52232070 - 52232126 1 57

GTG ...

VNS ...

18352 11 - 55450501 - 55450554 1 54

CTG ...

LAT ...

18354 1 + 191621291 - 191621464 1 174

GTG ...

VRD ...

18357 11 + 5569759 - 5569836 1 78

CTG ...

LRL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5