Metam
ORF

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ORF Browser

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

17974 11 + 70649925 - 70650029 1 105

CTG ...

LVP ...

17978 11 - 98707114 - 98707296 1 183

CTG ...

LLK ...

17980 11 + 53579746 - 53579856 1 111

GTG ...

VGV ...

17982 11 + 61487829 - 61487984 1 156

GTG ...

VQP ...

17984 11 + 58918114 - 58918200 1 87

CTG ...

LKF ...

17986 11 - 70238934 - 70238978 1 45

GTG ...

VLI ...

17988 11 + 94992461 - 94992499 1 39

GTG ...

VGS ...

17991 11 + 106285389 - 106285649 1 261

CTG ...

LEI ...

17993 1 - 172072715 - 172072909 1 195

CTG ...

LGQ ...

17995 11 - 113728801 - 113728866 1 66

GTG ...

VTR ...

17998 11 - 102404022 - 102404114 1 93

GTG ...

VKS ...

18001 11 + 78348584 - 78348643 1 60

GTG ...

VDD ...

18004 11 + 78313552 - 78313716 1 165

GTG ...

VLK ...

18007 1 + 75144986 - 75145120 1 135

GTG ...

VVY ...

18010 11 + 22994349 - 22994417 1 69

CTG ...

LKQ ...

18013 11 - 99024019 - 99024060 1 42

TTG ...

LSP ...

18017 11 + 105281142 - 105281258 1 117

CTG ...

LAC ...

18019 1 - 179752303 - 179752458 1 156

CTG ...

LLA ...

18022 11 - 23655422 - 23655595 1 174

CTG ...

LWA ...

18025 11 + 3291781 - 3291888 1 108

CTG ...

LRF ...

18028 11 + 78348599 - 78348643 1 45

GTG ...

VMH ...

18030 11 - 101119620 - 101119793 1 174

CTG ...

LLK ...

18032 11 - 3252640 - 3252753 1 114

TTG ...

LDI ...

18035 11 - 100584220 - 100584345 1 126

GTG ...

VPK ...

18037 11 + 78347802 - 78347903 1 102

TTG ...

LPI ...

18040 11 - 103679236 - 103679355 1 120

TTG ...

LSN ...

18042 11 - 120408681 - 120408887 1 207

CTG ...

LSS ...

18044 11 + 72266459 - 72266572 1 114

CTG ...

LTL ...

18046 11 - 70652124 - 70652180 1 57

TTG ...

LIN ...

18049 1 + 88227068 - 88227151 1 84

ATG ...

MRI ...

18052 11 - 50210549 - 50210629 1 81

CTG ...

LRE ...

18055 11 - 85198069 - 85198131 1 63

TTG ...

LVS ...

18058 11 - 59947987 - 59948067 1 81

ATG ...

MTE ...

18061 11 + 5012953 - 5013009 1 57

GTG ...

VIA ...

18064 11 + 70940415 - 70940483 1 69

TTG ...

LER ...

18066 11 + 106245385 - 106245441 1 57

GTG ...

VEE ...

18069 11 + 3680252 - 3680332 1 81

CTG ...

LRF ...

18072 11 + 101279157 - 101279204 1 48

GTG ...

VDI ...

18075 11 - 85191678 - 85191734 1 57

TTG ...

LKT ...

18077 11 - 102154509 - 102154655 1 147

CTG ...

LAS ...

18080 1 + 105664438 - 105664641 1 204

CTG ...

LEL ...

18084 11 - 106781850 - 106782137 1 288

CTG ...

LLK ...

18086 11 - 50298099 - 50298170 1 72

TTG ...

LTV ...

18088 11 + 72266507 - 72266572 1 66

GTG ...

VKS ...

18090 11 - 29246997 - 29247260 1 264

GTG ...

VSN ...

18092 11 + 97824861 - 97824953 1 93

TTG ...

LRR ...

18095 11 - 70010296 - 70010325 1 30

CTG ...

LVT ...

18097 11 + 72447220 - 72447333 1 114

TTG ...

LMR ...

18099 1 + 87297738 - 87297767 1 30

GTG ...

VPR ...

18102 11 + 72448226 - 72448381 1 156

CTG ...

LIE ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5