Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

17848 11 + 3333266 - 3333352 1 87

GTG ...

VHQ ...

17851 11 + 72448292 - 72448381 1 90

CTG ...

LNV ...

17853 11 + 105267211 - 105267246 1 36

CTG ...

LYD ...

17855 11 + 101071902 - 101072057 1 156

CTG ...

LAL ...

17857 11 - 97184923 - 97184961 1 39

TTG ...

LML ...

17859 11 + 32297123 - 32297179 1 57

CTG ...

LPI ...

17862 11 + 5105852 - 5105977 1 126

TTG ...

LAA ...

17865 11 + 95386537 - 95386620 1 84

ATG ...

MLP ...

17868 11 - 54756425 - 54756493 1 69

ATG ...

MLM ...

17870 11 - 6444333 - 6444398 1 66

CTG ...

LRE ...

17873 11 + 106048165 - 106048254 1 90

GTG ...

VHH ...

17875 11 + 120599277 - 120599318 1 42

ATG ...

MLE ...

17877 11 + 69070882 - 69070986 1 105

ATG ...

MSD ...

17880 11 + 109666654 - 109666734 1 81

CTG ...

LCC ...

17882 11 + 121503745 - 121503795 1 51

CTG ...

LGR ...

17884 11 - 100705238 - 100705408 1 171

TTG ...

LRS ...

17887 11 - 69979876 - 69979911 1 36

GTG ...

VGS ...

17889 11 + 5099828 - 5099902 1 75

CTG ...

LYT ...

17891 11 - 115514203 - 115514250 1 48

GTG ...

VWT ...

17894 1 - 178330158 - 178330280 1 123

GTG ...

VVE ...

17896 11 + 78538539 - 78538586 1 48

ATG ...

MLH ...

17899 11 - 78080033 - 78080230 1 198

GTG ...

VSC ...

17902 11 + 119272900 - 119273019 1 120

GTG ...

VPL ...

17905 11 + 17194731 - 17194865 1 135

GTG ...

VLK ...

17907 11 - 60789558 - 60789677 1 120

CTG ...

LRL ...

17909 11 + 32297147 - 32297179 1 33

ATG ...

MPL ...

17911 11 + 117354863 - 117354895 1 33

TTG ...

LSQ ...

17914 11 - 115514272 - 115514373 1 102

GTG ...

VEP ...

17916 11 + 58954877 - 58954906 1 30

GTG ...

VPR ...

17918 11 - 69736277 - 69736333 1 57

TTG ...

LFR ...

17921 1 - 65032676 - 65032708 1 33

TTG ...

LVT ...

17924 11 + 70006562 - 70006594 1 33

GTG ...

VLR ...

17928 11 + 48849867 - 48849989 1 123

GTG ...

VSF ...

17930 11 + 87127300 - 87127377 1 78

ATG ...

MAK ...

17932 11 + 59775549 - 59775587 1 39

TTG ...

LKL ...

17934 11 - 86585308 - 86585418 1 111

CTG ...

LVV ...

17937 11 + 106261525 - 106261737 1 213

CTG ...

LHK ...

17939 11 - 98707114 - 98707215 1 102

GTG ...

VTL ...

17942 11 + 106276710 - 106276871 1 162

ATG ...

MSL ...

17944 11 - 50206015 - 50206068 1 54

CTG ...

LKN ...

17947 11 + 93924548 - 93924688 1 141

GTG ...

VYE ...

17949 11 - 3648501 - 3648578 1 78

TTG ...

LEG ...

17951 1 - 93310092 - 93310238 1 147

CTG ...

LSA ...

17954 11 - 55450470 - 55450526 1 57

CTG ...

LFP ...

17957 11 + 119264272 - 119264514 1 243

CTG ...

LEI ...

17959 11 + 58051077 - 58051181 1 105

CTG ...

LSQ ...

17962 11 - 100716785 - 100716832 1 48

ATG ...

MTT ...

17965 11 + 3203674 - 3203709 1 36

CTG ...

LKQ ...

17968 11 + 69913179 - 69913331 1 153

GTG ...

VCV ...

17971 11 + 76945841 - 76945897 1 57

CTG ...

LKT ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5