Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

17710 11 - 29247011 - 29247058 1 48

TTG ...

LVY ...

17713 11 - 60906878 - 60906973 1 96

ATG ...

MSM ...

17716 11 - 97164720 - 97164806 1 87

CTG ...

LNE ...

17719 11 - 6439372 - 6439428 1 57

GTG ...

VGR ...

17722 11 + 51620111 - 51620155 1 45

GTG ...

VKE ...

17724 1 + 171125061 - 171125105 1 45

CTG ...

LQN ...

17727 11 - 69616671 - 69616820 1 150

CTG ...

LWV ...

17729 11 + 87196934 - 87197065 1 132

TTG ...

LDL ...

17732 11 + 106047667 - 106047834 1 168

TTG ...

LLN ...

17735 11 + 88204466 - 88204522 1 57

GTG ...

VGS ...

17738 11 + 4177510 - 4177608 1 99

TTG ...

LPP ...

17741 11 + 102192039 - 102192194 1 156

CTG ...

LFG ...

17746 11 + 52403208 - 52403453 1 246

CTG ...

LLR ...

17748 11 - 115609425 - 115609607 1 183

GTG ...

VDH ...

17750 11 - 102995144 - 102995173 1 30

GTG ...

VTV ...

17752 11 - 98728774 - 98728884 1 111

TTG ...

LQA ...

17755 11 - 3648398 - 3648640 1 243

CTG ...

LGW ...

17758 11 + 4722377 - 4722460 1 84

ATG ...

MWP ...

17761 11 + 105267187 - 105267246 1 60

CTG ...

LDH ...

17763 11 + 94339649 - 94339699 1 51

CTG ...

LTE ...

17767 11 + 31058908 - 31059003 1 96

TTG ...

LLS ...

17769 11 + 87856596 - 87856664 1 69

GTG ...

VPS ...

17772 11 - 69601248 - 69601394 1 147

TTG ...

LVA ...

17774 11 - 55399129 - 55399254 1 126

CTG ...

LVT ...

17776 11 + 103052296 - 103052328 1 33

ATG ...

MPW ...

17778 11 - 69616671 - 69616790 1 120

CTG ...

LRQ ...

17780 11 + 58331392 - 58331523 1 132

TTG ...

LLL ...

17782 1 + 69996820 - 69996912 1 93

GTG ...

VTS ...

17785 11 - 21559114 - 21559302 1 189

GTG ...

VQQ ...

17788 11 - 62536278 - 62536364 1 87

GTG ...

VKH ...

17791 11 + 5575658 - 5575780 1 123

GTG ...

VRT ...

17794 11 - 120416236 - 120416364 1 129

CTG ...

LEN ...

17797 11 + 119268058 - 119268222 1 165

CTG ...

LGV ...

17800 11 + 62602914 - 62603027 1 114

TTG ...

LSW ...

17802 11 + 106256854 - 106256946 1 93

CTG ...

LEE ...

17804 11 + 109660114 - 109660173 1 60

GTG ...

VLS ...

17806 11 - 86585308 - 86585388 1 81

CTG ...

LSI ...

17809 11 - 116082268 - 116082354 1 87

CTG ...

LMK ...

17812 1 - 82563399 - 82563479 1 81

GTG ...

VAR ...

17815 11 + 116214877 - 116215077 1 201

GTG ...

VEG ...

17818 1 + 157412777 - 157412839 1 63

CTG ...

LLV ...

17821 11 + 87127339 - 87127377 1 39

ATG ...

MGR ...

17824 11 + 17193031 - 17193225 1 195

GTG ...

VEE ...

17829 11 + 67682683 - 67682757 1 75

CTG ...

LCQ ...

17831 1 - 161876369 - 161876440 1 72

TTG ...

LAS ...

17834 11 - 101413890 - 101414054 1 165

GTG ...

VTR ...

17838 11 - 70010694 - 70010747 1 54

CTG ...

LAD ...

17841 11 + 106286883 - 106287029 1 147

GTG ...

VIT ...

17843 11 + 50382967 - 50383077 1 111

ATG ...

MGT ...

17845 11 - 69975184 - 69975249 1 66

ATG ...

MTS ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5