Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

17580 11 + 31058863 - 31059003 1 141

TTG ...

LFI ...

17582 11 - 54756425 - 54756598 1 174

CTG ...

LQL ...

17584 11 - 58937136 - 58937189 1 54

ATG ...

MPG ...

17587 1 + 128244334 - 128244366 1 33

CTG ...

LAG ...

17590 11 + 55109478 - 55109558 1 81

GTG ...

VVG ...

17592 11 + 98690494 - 98690667 1 174

CTG ...

LRH ...

17594 11 + 72447202 - 72447333 1 132

CTG ...

LAQ ...

17596 11 + 87109256 - 87109291 1 36

ATG ...

MST ...

17599 11 - 116106001 - 116106162 1 162

CTG ...

LAS ...

17601 11 + 29693101 - 29693142 1 42

CTG ...

LPV ...

17603 11 - 69970504 - 69970710 1 207

CTG ...

LGL ...

17606 11 - 84422956 - 84423012 1 57

TTG ...

LFR ...

17609 11 - 95310031 - 95310096 1 66

GTG ...

VLP ...

17612 11 - 70237512 - 70237562 1 51

CTG ...

LHP ...

17615 11 + 69050411 - 69050485 1 75

CTG ...

LMV ...

17618 11 - 97163375 - 97163440 1 66

CTG ...

LKG ...

17622 11 + 78254854 - 78255138 1 285

GTG ...

VSA ...

17625 11 - 53430622 - 53430711 1 90

CTG ...

LSQ ...

17627 1 - 178333077 - 178333109 1 33

GTG ...

VKK ...

17629 11 + 107994385 - 107994621 1 237

ATG ...

MLS ...

17632 11 - 50311651 - 50311713 1 63

ATG ...

MDM ...

17634 1 + 63176915 - 63177040 1 126

TTG ...

LER ...

17636 11 + 52232045 - 52232107 1 63

TTG ...

LFS ...

17639 11 + 69089731 - 69089979 1 249

GTG ...

VVD ...

17641 11 - 116471397 - 116471492 1 96

GTG ...

VDI ...

17644 11 + 78263932 - 78264045 1 114

TTG ...

LEK ...

17647 11 + 88049464 - 88049685 1 222

ATG ...

MED ...

17649 11 + 106282990 - 106283079 1 90

CTG ...

LQC ...

17651 11 + 68751981 - 68752043 1 63

CTG ...

LES ...

17654 11 + 106282963 - 106283079 1 117

CTG ...

LED ...

17656 11 - 70664276 - 70664473 1 198

CTG ...

LAQ ...

17659 11 + 121503736 - 121503795 1 60

TTG ...

LAE ...

17662 11 - 116107754 - 116107981 1 228

GTG ...

VSQ ...

17664 11 - 69601303 - 69601341 1 39

ATG ...

MPH ...

17667 11 - 3256501 - 3256680 1 180

CTG ...

LDV ...

17670 11 + 75752013 - 75752054 1 42

TTG ...

LNR ...

17672 11 - 50311651 - 50311716 1 66

ATG ...

MMD ...

17674 1 - 67009985 - 67010026 1 42

TTG ...

LIP ...

17677 11 + 72447175 - 72447333 1 159

GTG ...

VMV ...

17679 11 + 105128881 - 105129084 1 204

TTG ...

LEK ...

17682 11 + 78320643 - 78320690 1 48

CTG ...

LNQ ...

17685 11 + 60830702 - 60830731 1 30

TTG ...

LID ...

17688 1 + 172082695 - 172082730 1 36

CTG ...

LGG ...

17691 1 + 179684254 - 179684307 1 54

ATG ...

MAL ...

17694 11 - 121336956 - 121337063 1 108

GTG ...

VVL ...

17696 1 - 10034043 - 10034087 1 45

ATG ...

MAA ...

17699 11 - 120437596 - 120437664 1 69

CTG ...

LAE ...

17701 11 + 67675653 - 67675766 1 114

CTG ...

LEI ...

17704 11 + 45890714 - 45890827 1 114

CTG ...

LSD ...

17707 11 - 3931444 - 3931551 1 108

GTG ...

VKL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5