Metam
ORF

Logo

ORF Browser

Selected

filters

Database

M.musculus

ORFs

No result matching criteria

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

17441 1 - 118311086 - 118311196 1 111

TTG ...

LAQ ...

17444 11 + 116657221 - 116657286 1 66

ATG ...

MGQ ...

17447 11 - 21354341 - 21354379 1 39

GTG ...

VLL ...

17450 11 - 120580194 - 120580238 1 45

ATG ...

MKA ...

17453 11 + 20215671 - 20215706 1 36

TTG ...

LES ...

17455 11 + 57528122 - 57528187 1 66

ATG ...

MHH ...

17458 11 + 31061399 - 31061620 1 222

TTG ...

LLI ...

17460 1 + 42895374 - 42895421 1 48

CTG ...

LEK ...

17463 11 - 120730702 - 120730881 1 180

GTG ...

VCV ...

17466 11 + 98690467 - 98690667 1 201

TTG ...

LHA ...

17469 11 - 101302166 - 101302276 1 111

CTG ...

LGG ...

17472 11 + 93924515 - 93924688 1 174

GTG ...

VES ...

17475 11 - 70944841 - 70944870 1 30

CTG ...

LAK ...

17478 11 + 69998344 - 69998535 1 192

GTG ...

VRV ...

17481 11 - 106213173 - 106213241 1 69

ATG ...

MIM ...

17484 1 + 153447915 - 153447998 1 84

GTG ...

VCV ...

17487 1 + 91527706 - 91527783 1 78

GTG ...

VKA ...

17490 11 + 58173124 - 58173162 1 39

CTG ...

LPG ...

17493 11 + 62602938 - 62603027 1 90

CTG ...

LLV ...

17496 11 + 29736367 - 29736582 1 216

TTG ...

LES ...

17498 11 + 58923825 - 58923974 1 150

GTG ...

VFS ...

17501 11 + 17262717 - 17262803 1 87

CTG ...

LES ...

17504 11 - 72214159 - 72214212 1 54

ATG ...

MLE ...

17507 11 - 101093616 - 101093777 1 162

GTG ...

VSD ...

17510 1 - 75136395 - 75136445 1 51

GTG ...

VSW ...

17513 11 - 115609425 - 115609637 1 213

GTG ...

VDL ...

17515 1 + 66717772 - 66717876 1 105

GTG ...

VSG ...

17518 1 + 191827270 - 191827485 1 216

CTG ...

LPD ...

17521 1 - 172067316 - 172067465 1 150

GTG ...

VRL ...

17524 11 + 99041290 - 99041343 1 54

ATG ...

MQR ...

17527 11 - 101294903 - 101295115 1 213

CTG ...

LQR ...

17530 11 + 101072226 - 101072306 1 81

CTG ...

LDR ...

17533 11 - 61342415 - 61342528 1 114

CTG ...

LMI ...

17536 11 - 51606771 - 51606842 1 72

GTG ...

VAP ...

17538 11 + 72446021 - 72446065 1 45

GTG ...

VTS ...

17540 11 - 103000243 - 103000287 1 45

TTG ...

LPV ...

17542 11 + 105207413 - 105207466 1 54

CTG ...

LCS ...

17545 11 + 57528068 - 57528187 1 120

CTG ...

LLW ...

17547 11 + 106284675 - 106284842 1 168

CTG ...

LED ...

17549 11 + 77216420 - 77216452 1 33

ATG ...

MPC ...

17552 11 + 98693416 - 98693541 1 126

CTG ...

LGE ...

17554 11 + 80246682 - 80246816 1 135

TTG ...

LSP ...

17557 11 + 106261480 - 106261737 1 258

GTG ...

VTP ...

17559 11 + 50382955 - 50383077 1 123

CTG ...

LTT ...

17562 11 + 6296958 - 6296990 1 33

GTG ...

VEG ...

17565 11 - 70978632 - 70978778 1 147

CTG ...

LTS ...

17568 11 - 115490797 - 115490946 1 150

CTG ...

LGP ...

17571 1 - 179799203 - 179799322 1 120

TTG ...

LTA ...

17574 11 - 69616671 - 69616814 1 144

GTG ...

VDG ...

17577 11 - 84916255 - 84916332 1 78

CTG ...

LNC ...

Previous 152 Next

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5