Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

17294 11 - 88348831 - 88348887 1 57

CTG ...

LSP ...

17297 11 + 114675586 - 114675684 1 99

GTG ...

VWL ...

17300 11 + 62883652 - 62883810 1 159

CTG ...

LFF ...

17303 11 - 106785112 - 106785264 1 153

CTG ...

LID ...

17305 11 + 88049440 - 88049685 1 246

TTG ...

LMG ...

17308 11 + 72445937 - 72446065 1 129

CTG ...

LAE ...

17310 11 + 82783571 - 82783750 1 180

CTG ...

LAR ...

17313 11 - 106264066 - 106264119 1 54

GTG ...

VQQ ...

17316 11 + 101471088 - 101471306 1 219

GTG ...

VSY ...

17319 11 - 61174711 - 61174824 1 114

CTG ...

LAA ...

17322 11 - 60789144 - 60789308 1 165

TTG ...

LTL ...

17325 11 - 50943546 - 50943716 1 171

TTG ...

LAL ...

17331 11 + 48849840 - 48849989 1 150

GTG ...

VAL ...

17334 11 + 53415453 - 53415515 1 63

CTG ...

LAR ...

17337 11 - 116107754 - 116107999 1 246

GTG ...

VAE ...

17340 11 + 106051839 - 106051970 1 132

TTG ...

LTS ...

17342 1 - 172200328 - 172200549 1 222

CTG ...

LTN ...

17345 11 + 69324192 - 69324260 1 69

ATG ...

MEC ...

17348 11 + 59775519 - 59775587 1 69

CTG ...

LKE ...

17351 11 - 103683735 - 103683899 1 165

CTG ...

LQF ...

17356 11 + 28854477 - 28854575 1 99

TTG ...

LQT ...

17359 11 + 72266480 - 72266572 1 93

ATG ...

MTS ...

17362 11 - 115612408 - 115612500 1 93

GTG ...

VDG ...

17365 11 + 119264335 - 119264514 1 180

GTG ...

VFL ...

17368 11 + 51623131 - 51623217 1 87

GTG ...

VIM ...

17371 11 + 62885103 - 62885177 1 75

CTG ...

LRW ...

17373 11 - 43730474 - 43730578 1 105

CTG ...

LRP ...

17376 11 - 4704153 - 4704245 1 93

TTG ...

LPS ...

17379 11 + 106281939 - 106281992 1 54

TTG ...

LGV ...

17381 11 - 120543946 - 120543996 1 51

GTG ...

VLS ...

17384 11 + 67586618 - 67586743 1 126

ATG ...

MRK ...

17387 11 + 52119153 - 52119299 1 147

GTG ...

VTC ...

17389 11 + 53584322 - 53584516 1 195

TTG ...

LRY ...

17392 11 + 75755602 - 75755745 1 144

GTG ...

VTF ...

17395 11 - 120543896 - 120543970 1 75

CTG ...

LSS ...

17397 11 - 51605471 - 51605545 1 75

CTG ...

LYN ...

17399 11 + 88049127 - 88049168 1 42

ATG ...

MAL ...

17401 11 - 62525236 - 62525274 1 39

CTG ...

LPG ...

17404 11 - 76233187 - 76233270 1 84

CTG ...

LTP ...

17407 11 + 58331410 - 58331523 1 114

CTG ...

LLP ...

17412 11 - 5534889 - 5534957 1 69

CTG ...

LNS ...

17415 11 + 101564776 - 101564832 1 57

GTG ...

VRV ...

17418 11 - 54740402 - 54740545 1 144

CTG ...

LPS ...

17421 11 + 5955866 - 5955904 1 39

CTG ...

LGL ...

17424 1 - 128413645 - 128413704 1 60

ATG ...

MLF ...

17427 11 - 69921261 - 69921332 1 72

CTG ...

LLG ...

17430 11 - 70239664 - 70239780 1 117

CTG ...

LCS ...

17433 11 + 46441136 - 46441228 1 93

CTG ...

LSR ...

17436 11 + 29740987 - 29741082 1 96

GTG ...

VLM ...

17438 11 + 78339352 - 78339492 1 141

CTG ...

LPP ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5