Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

17164 3 - 95301316 - 95301375 1 60

CTG ...

LRK ...

17166 3 - 50427640 - 50427690 1 51

CTG ...

LII ...

17168 3 + 63990260 - 63990331 1 72

CTG ...

LDA ...

17170 3 - 103736955 - 103737002 1 48

CTG ...

LEP ...

17172 3 + 104652941 - 104652982 1 42

TTG ...

LLC ...

17174 3 + 98139621 - 98139686 1 66

TTG ...

LVL ...

17176 3 + 95488417 - 95488470 1 54

ATG ...

MAV ...

17179 3 - 95036618 - 95036668 1 51

TTG ...

LYV ...

17181 3 + 86757503 - 86757541 1 39

GTG ...

VVL ...

17183 3 - 131248376 - 131248459 1 84

CTG ...

LKN ...

17185 3 + 89266847 - 89266984 1 138

GTG ...

VAT ...

17187 3 - 92850167 - 92850214 1 48

TTG ...

LWQ ...

17189 3 + 89207847 - 89207879 1 33

ATG ...

MDG ...

17191 3 - 95035234 - 95035272 1 39

TTG ...

LSV ...

17193 3 - 93018411 - 93018524 1 114

CTG ...

LWF ...

17195 3 - 92868557 - 92868622 1 66

CTG ...

LWL ...

17197 3 - 88484923 - 88484985 1 63

CTG ...

LAL ...

17199 3 - 95734350 - 95734496 1 147

ATG ...

MPP ...

17201 1 - 54994427 - 54995393 2 63

TTG ...

LIL ...

17203 11 - 55399188 - 55399232 1 45

ATG ...

MRA ...

17206 11 - 102999743 - 102999778 1 36

ATG ...

MAT ...

17209 11 + 31081597 - 31081626 1 30

TTG ...

LIL ...

17212 11 + 70925775 - 70925930 1 156

GTG ...

VLM ...

17215 1 - 71604962 - 71605036 1 75

GTG ...

VVS ...

17218 11 + 120605296 - 120605364 1 69

ATG ...

MTA ...

17221 11 - 120550616 - 120550690 1 75

CTG ...

LTF ...

17224 1 + 34443668 - 34443709 1 42

GTG ...

VVH ...

17227 11 + 31055536 - 31055574 1 39

GTG ...

VDG ...

17229 1 + 172097742 - 172097813 1 72

CTG ...

LFG ...

17232 11 - 59809656 - 59809793 1 138

TTG ...

LPR ...

17235 11 + 106285530 - 106285649 1 120

CTG ...

LFT ...

17238 11 - 70944088 - 70944156 1 69

CTG ...

LIP ...

17241 11 - 118317425 - 118317514 1 90

CTG ...

LTK ...

17243 1 - 178337552 - 178337686 1 135

CTG ...

LQQ ...

17245 1 - 181819792 - 181819974 1 183

GTG ...

VML ...

17248 11 + 69089755 - 69089979 1 225

GTG ...

VDK ...

17251 11 + 106282984 - 106283079 1 96

TTG ...

LVL ...

17253 11 - 97231877 - 97231948 1 72

GTG ...

VMN ...

17256 11 + 69395828 - 69395977 1 150

CTG ...

LTR ...

17259 1 - 74283874 - 74284008 1 135

TTG ...

LRK ...

17262 11 - 51626995 - 51627051 1 57

TTG ...

LNR ...

17265 11 + 58954772 - 58954906 1 135

GTG ...

VQK ...

17268 11 + 98950256 - 98950318 1 63

ATG ...

MPP ...

17271 11 + 61486077 - 61486169 1 93

ATG ...

MIS ...

17274 11 + 5099768 - 5099902 1 135

TTG ...

LSS ...

17278 11 - 74679544 - 74679600 1 57

CTG ...

LGT ...

17282 11 - 121336956 - 121337066 1 111

GTG ...

VVV ...

17285 11 + 72444724 - 72444981 1 258

GTG ...

VGT ...

17288 11 - 100434691 - 100434762 1 72

CTG ...

LCQ ...

17291 1 + 85905365 - 85905406 1 42

GTG ...

VGT ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5