Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

14590 19 - 37303890 - 37303961 1 72

CTG ...

LTA ...

14592 19 - 5100780 - 5104675 2 54

ATG ...

MAS ...

14594 19 - 37998320 - 38022586 2 39

TTG ...

LSK ...

14596 19 - 5991598 - 5991955 3 120

CTG ...

LSS ...

14598 19 - 37277785 - 37280619 2 264

TTG ...

LLQ ...

14600 19 - 20382957 - 20383863 3 126

TTG ...

LYF ...

14603 1 - 86352175 - 86352228 1 54

CTG ...

LEL ...

14606 1 - 84760759 - 84760836 1 78

GTG ...

VQY ...

14608 19 - 20373714 - 20375359 3 192

CTG ...

LSA ...

14610 19 + 10627221 - 10627503 2 30

GTG ...

VSE ...

14612 19 - 6907634 - 6908010 2 69

CTG ...

LGH ...

14615 19 - 5347989 - 5348452 2 117

CTG ...

LEN ...

14617 19 + 9000802 - 9001699 2 63

CTG ...

LSL ...

14619 1 - 86356526 - 86356642 1 117

ATG ...

MMR ...

14621 1 - 71641148 - 71641210 1 63

GTG ...

VRH ...

14623 19 - 4915042 - 4916762 3 198

ATG ...

MCW ...

14625 19 - 5348495 - 5349108 2 42

ATG ...

MQN ...

14627 19 - 46379454 - 46379665 2 105

TTG ...

LLS ...

14629 19 - 37315496 - 37325215 3 213

CTG ...

LET ...

14631 19 + 4732014 - 4732430 2 114

CTG ...

LLA ...

14633 19 - 5100780 - 5104657 2 36

ATG ...

MTS ...

14635 19 - 6907070 - 6907267 2 84

CTG ...

LTP ...

14637 19 - 20382957 - 20383884 3 147

TTG ...

LIL ...

14639 19 - 37915744 - 37916483 2 102

ATG ...

MRR ...

14641 19 - 37303655 - 37309873 3 213

GTG ...

VLT ...

14643 19 - 4915042 - 4916409 3 171

GTG ...

VVA ...

14645 1 + 150102698 - 150102781 1 84

TTG ...

LPS ...

14647 19 - 20379701 - 20380430 3 96

TTG ...

LSP ...

14649 19 - 6007528 - 6008709 2 81

GTG ...

VKW ...

14651 19 - 6837638 - 6837790 2 81

CCG ...

PKS ...

14653 19 - 37303666 - 37303973 2 93

TTG ...

LKG ...

14655 19 - 20379684 - 20380377 2 60

CTG ...

LET ...

14657 1 - 45403417 - 45403512 1 96

CTG ...

LGK ...

14659 19 - 20382957 - 20383806 2 69

ATG ...

MLS ...

14661 1 + 125566563 - 125566592 1 30

TTG ...

LEA ...

14664 19 + 3980102 - 3980698 2 78

ATG ...

MKP ...

14667 19 - 20379684 - 20380353 2 36

TTG ...

LLL ...

14669 19 - 11322400 - 11324462 2 42

ATG ...

MKT ...

14671 19 - 4915042 - 4916777 3 213

ATG ...

MYR ...

14673 19 - 18581270 - 18584780 3 198

CTG ...

LQT ...

14675 19 - 20379684 - 20380347 2 30

TTG ...

LPR ...

14677 1 + 171356803 - 171356832 1 30

CTG ...

LPW ...

14679 19 + 4732059 - 4732430 2 69

GTG ...

VRT ...

14681 19 - 5348495 - 5349171 2 105

CTG ...

LWP ...

14683 19 - 37312135 - 37313531 2 51

ATG ...

MGF ...

14685 19 + 47855273 - 47857891 2 84

CTG ...

LPL ...

14687 19 - 37303666 - 37303961 2 81

CTG ...

LTA ...

14689 19 - 47286704 - 47314058 2 39

ATG ...

MSS ...

14692 19 - 18581270 - 18584792 3 210

CTG ...

LGA ...

14694 1 + 59698401 - 59698463 1 63

TTG ...

LIP ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5