Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

14486 19 + 7532192 - 7532308 1 117

CTG ...

LQA ...

14489 19 - 37317973 - 37318233 1 261

CTG ...

LFI ...

14491 19 - 60772748 - 60772903 1 156

GTG ...

VRR ...

14493 1 + 38996155 - 38996283 1 129

CTG ...

LSE ...

14496 19 - 37287081 - 37287230 1 150

ATG ...

MRS ...

14498 19 + 9008585 - 9008614 1 30

TTG ...

LRL ...

14500 19 - 60766322 - 60766519 1 198

ATG ...

MIG ...

14502 19 - 37328952 - 37329017 1 66

ATG ...

MFP ...

14504 19 - 18593852 - 18593905 1 54

GTG ...

VER ...

14506 19 + 7509990 - 7510031 1 42

GTG ...

VVI ...

14508 19 - 20377599 - 20377655 1 57

CTG ...

LDL ...

14510 19 - 20375320 - 20375364 1 45

ATG ...

MIC ...

14512 19 - 46384248 - 46384289 1 42

CTG ...

LER ...

14514 19 - 37328977 - 37329204 1 228

GTG ...

VFS ...

14516 1 - 92460376 - 92460420 1 45

CTG ...

LKQ ...

14518 19 - 60766322 - 60766549 1 228

ATG ...

MIG ...

14520 19 - 37328952 - 37329098 1 147

ATG ...

MNI ...

14522 19 - 5365025 - 5365099 1 75

ATG ...

MAE ...

14525 19 - 6907895 - 6908095 1 201

GTG ...

VEV ...

14527 19 - 5348356 - 5348472 1 117

GTG ...

VPK ...

14529 19 - 60766322 - 60766615 1 294

ATG ...

MMT ...

14531 19 + 10627196 - 10627243 1 48

CTG ...

LKM ...

14533 19 - 4923038 - 4923127 1 90

CTG ...

LWG ...

14535 19 - 37313443 - 37313550 1 108

GTG ...

VQK ...

14537 1 + 172113385 - 172113414 1 30

GTG ...

VMC ...

14539 19 - 37313969 - 37314067 1 99

GTG ...

VNT ...

14541 19 - 37312079 - 37312156 1 78

ATG ...

MLL ...

14543 19 + 47863428 - 47863520 1 93

TTG ...

LII ...

14545 1 + 106950769 - 106950834 1 66

CTG ...

LRN ...

14547 19 - 37309784 - 37309822 1 39

ATG ...

MVL ...

14549 19 + 47620783 - 47620893 1 111

GTG ...

VLC ...

14551 19 - 20382778 - 20382972 1 195

TTG ...

LDE ...

14553 1 + 135766717 - 135766833 1 117

CTG ...

LAG ...

14555 19 - 4923038 - 4923136 1 99

TTG ...

LAD ...

14557 19 - 60871475 - 60871504 1 30

CTG ...

LLS ...

14559 19 + 57384235 - 57384267 1 33

TTG ...

LTE ...

14562 19 - 60764027 - 60764158 1 132

GTG ...

VNG ...

14564 19 + 4726620 - 4726676 1 57

ATG ...

MHT ...

14566 19 + 44303062 - 44303166 1 105

CTG ...

LAH ...

14568 1 - 161244207 - 161244323 1 117

GTG ...

VKH ...

14570 19 - 46384216 - 46384305 1 90

ATG ...

MAS ...

14572 1 - 93421080 - 93421190 1 111

TTG ...

LTF ...

14574 19 - 53014599 - 53014685 1 87

CTG ...

LFS ...

14576 19 + 4149945 - 4149989 1 45

ATG ...

MKS ...

14578 19 - 5801825 - 5801932 1 108

ATG ...

MEV ...

14580 19 - 37315345 - 37315536 1 192

CTG ...

LSS ...

14582 19 - 37313969 - 37314058 1 90

CTG ...

LVG ...

14584 19 - 20378361 - 20378450 1 90

GTG ...

VNV ...

14586 1 - 86357068 - 86357115 1 48

ATG ...

MRM ...

14588 19 - 60763143 - 60763196 1 54

ATG ...

MIG ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5