Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

14374 19 - 20377599 - 20377649 1 51

CTG ...

LEL ...

14376 19 - 60766322 - 60766579 1 258

ATG ...

MNG ...

14378 19 - 37328952 - 37329143 1 192

GTG ...

VNI ...

14380 19 + 44301347 - 44301406 1 60

CTG ...

LAG ...

14382 19 - 53014599 - 53014655 1 57

GTG ...

VTV ...

14384 19 - 53004789 - 53004842 1 54

CTG ...

LYA ...

14386 19 + 47620822 - 47620893 1 72

CTG ...

LNM ...

14388 19 + 12463078 - 12463110 1 33

GTG ...

VEA ...

14391 1 + 106876095 - 106876169 1 75

GTG ...

VDE ...

14393 19 + 8826648 - 8826716 1 69

ATG ...

MCT ...

14395 19 - 37312079 - 37312150 1 72

TTG ...

LLS ...

14397 19 - 4913769 - 4913855 1 87

CTG ...

LMP ...

14399 19 - 18593871 - 18593918 1 48

GTG ...

VIP ...

14401 1 - 75217215 - 75217265 1 51

CTG ...

LEN ...

14403 19 - 20378361 - 20378429 1 69

CTG ...

LTS ...

14405 19 - 29646201 - 29646242 1 42

TTG ...

LAP ...

14408 19 + 47620753 - 47620893 1 141

CTG ...

LKP ...

14410 19 + 47733709 - 47733822 1 114

CTG ...

LEK ...

14412 19 + 53541151 - 53541210 1 60

CTG ...

LPR ...

14415 19 - 53004789 - 53004821 1 33

CTG ...

LHC ...

14417 19 + 4149960 - 4149989 1 30

GTG ...

VDQ ...

14420 19 - 53004789 - 53004845 1 57

CTG ...

LLY ...

14422 1 + 171462891 - 171462944 1 54

CTG ...

LHR ...

14424 19 - 6907503 - 6907637 1 135

CTG ...

LKA ...

14426 19 - 60764027 - 60764233 1 207

GTG ...

VDG ...

14428 19 - 6906846 - 6906914 1 69

CTG ...

LNV ...

14430 19 - 37921332 - 37921394 1 63

CTG ...

LLG ...

14433 19 - 20376623 - 20376706 1 84

GTG ...

VCH ...

14435 19 - 5801825 - 5801926 1 102

GTG ...

VKD ...

14437 19 + 4194782 - 4194817 1 36

ATG ...

MAM ...

14440 19 - 37312079 - 37312153 1 75

CTG ...

LLL ...

14442 19 - 6838116 - 6838157 1 42

TAT ...

YHL ...

14445 19 - 37328977 - 37329126 1 150

TTG ...

LGT ...

14447 19 - 5104829 - 5104891 1 63

GTG ...

VWI ...

14449 1 + 130719277 - 130719312 1 36

ATG ...

MKL ...

14451 19 + 4149954 - 4149989 1 36

TTG ...

LPV ...

14453 19 - 20378447 - 20378515 1 69

ATG ...

MVT ...

14455 19 - 6906846 - 6906941 1 96

GTG ...

VID ...

14457 19 - 20375156 - 20375323 1 168

TTG ...

LIR ...

14459 19 - 4915042 - 4915080 1 39

ATG ...

MRK ...

14461 19 + 21276487 - 21276576 1 90

GTG ...

VAF ...

14463 19 - 37913333 - 37913392 1 60

CTG ...

LST ...

14465 19 + 47855295 - 47855327 1 33

CTG ...

LMV ...

14468 19 - 20378447 - 20378482 1 36

ATG ...

MKL ...

14470 19 - 6007248 - 6007295 1 48

CTG ...

LAS ...

14473 19 - 37287081 - 37287164 1 84

CTG ...

LMT ...

14475 19 + 36887092 - 36887130 1 39

GTG ...

VGK ...

14478 19 + 5368136 - 5368168 1 33

CTG ...

LEE ...

14481 19 - 11324418 - 11324462 1 45

ATG ...

MKT ...

14484 19 - 60766322 - 60766558 1 237

ATG ...

MLM ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5