Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

14696 19 - 37312135 - 37313516 2 36

GTG ...

VQG ...

14698 19 - 60763143 - 60764104 2 195

ATG ...

MTK ...

14700 19 - 46382403 - 46384305 2 102

ATG ...

MAS ...

14702 19 - 20382957 - 20383893 3 156

TTG ...

LRE ...

14704 19 - 20382957 - 20383851 2 114

GTG ...

VWM ...

14706 19 - 46892286 - 46892560 2 72

ATG ...

MLG ...

14708 19 - 6954745 - 6954942 3 120

GTG ...

VLL ...

14711 19 + 34101220 - 34109558 2 99

ATG ...

MAS ...

14713 19 + 53346462 - 53369567 2 45

ATG ...

MSW ...

14716 19 - 37277785 - 37280640 2 285

TTG ...

LPD ...

14718 19 - 37271534 - 37272265 3 150

GTG ...

VVQ ...

14720 19 - 18581270 - 18584795 3 213

CTG ...

LLG ...

14722 19 - 20382957 - 20384522 3 162

ATG ...

MYP ...

14724 19 - 37915744 - 37916459 2 78

TTG ...

LTW ...

14726 19 - 37315496 - 37318248 3 294

TTG ...

LYC ...

14728 19 - 20382957 - 20383830 2 93

TTG ...

LTF ...

14730 19 - 6954745 - 6954939 3 117

CTG ...

LLQ ...

14732 19 - 5348030 - 5348565 3 189

TTG ...

LDS ...

14734 19 - 37915744 - 37916507 2 126

ATG ...

MTT ...

14736 19 - 34246210 - 34246666 2 45

CTG ...

LDV ...

14739 19 - 37314064 - 37314881 2 57

TTG ...

LGT ...

14741 19 - 20382957 - 20383845 2 108

ATG ...

MKQ ...

14743 19 - 7199524 - 7199694 2 75

CTG ...

LNS ...

14746 19 - 37312157 - 37313550 2 48

GTG ...

VQK ...

14748 19 - 6907634 - 6908019 2 78

TTG ...

LES ...

14750 19 + 4732035 - 4732430 2 93

CTG ...

LPC ...

14752 19 - 20382957 - 20384510 3 150

ATG ...

MLL ...

14754 19 - 6907070 - 6907579 3 135

TTG ...

LKS ...

14756 19 - 5100780 - 5104666 2 45

TTG ...

LWC ...

14758 19 - 5100780 - 5104867 3 150

TTG ...

LSW ...

14760 19 + 46502982 - 46512735 2 45

GTG ...

VTW ...

14762 19 - 20373714 - 20376711 4 240

GTG ...

VKC ...

14764 19 - 37271534 - 37272235 3 120

GTG ...

VLR ...

14766 19 - 6907634 - 6908028 2 87

GTG ...

VFC ...

14768 19 - 18581270 - 18584756 3 174

CTG ...

LCW ...

14770 19 - 37915744 - 37916513 2 132

CTG ...

LSM ...

14772 19 - 60763143 - 60764158 2 249

GTG ...

VNG ...

14774 19 - 60763143 - 60764092 2 183

TTG ...

LNE ...

14776 19 - 20382957 - 20384507 3 147

TTG ...

LLP ...

14778 19 + 34101193 - 34109558 2 126

GTG ...

VDC ...

14780 19 - 37314064 - 37314866 2 42

CTG ...

LEA ...

14782 19 + 6365695 - 6368394 2 129

ATG ...

MEP ...

14784 19 - 20382957 - 20384504 3 144

CTG ...

LPC ...

14786 19 - 46035774 - 46035958 2 99

TTG ...

LSL ...

14789 2 - 164355475 - 164355558 1 84

TTG ...

LRS ...

14792 2 + 162933474 - 162933512 1 39

ATG ...

MDH ...

14795 1 + 106953709 - 106953753 1 45

TTG ...

LAR ...

14797 2 - 26925591 - 26925680 1 90

CTG ...

LCF ...

14800 2 + 130024438 - 130024503 1 66

GTG ...

VAI ...

14803 2 - 103779445 - 103779495 1 51

CTG ...

LYL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5