Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

13922 19 + 44303145 - 44303273 1 129

CTG ...

LLS ...

13925 19 - 60763143 - 60763262 1 120

ATG ...

MKV ...

13928 19 + 6372055 - 6372117 1 63

ATG ...

MQR ...

13931 19 - 37309828 - 37309878 1 51

ATG ...

MEC ...

13934 19 - 4913769 - 4913852 1 84

ATG ...

MPG ...

13937 19 + 46272244 - 46272273 1 30

CTG ...

LLR ...

13940 19 - 37303890 - 37303973 1 84

TTG ...

LKG ...

13942 19 + 44303052 - 44303273 1 222

GTG ...

VST ...

13944 19 - 37309860 - 37309916 1 57

TTG ...

LFI ...

13946 19 - 60766322 - 60766522 1 201

ATG ...

MMI ...

13948 19 + 10627178 - 10627243 1 66

ATG ...

MTI ...

13951 19 + 4726641 - 4726676 1 36

ATG ...

MLS ...

13954 19 - 6906846 - 6906875 1 30

CTG ...

LAP ...

13957 19 - 4008618 - 4008647 1 30

CTG ...

LWR ...

13960 1 + 150102689 - 150102781 1 93

TTG ...

LHS ...

13962 19 + 9010466 - 9010525 1 60

ATG ...

MLI ...

13965 19 - 4394823 - 4394876 1 54

CTG ...

LEW ...

13968 19 + 5493390 - 5493452 1 63

ATG ...

MNY ...

13971 19 + 10627157 - 10627243 1 87

GTG ...

VQW ...

13973 19 + 11978946 - 11978987 1 42

GTG ...

VEH ...

13976 19 - 20382778 - 20382960 1 183

TTG ...

LRK ...

13978 19 - 37328952 - 37329056 1 105

ATG ...

MHS ...

13981 19 - 6907503 - 6907604 1 102

CTG ...

LSV ...

13983 19 - 6907070 - 6907138 1 69

CTG ...

LFP ...

13985 19 - 20383753 - 20383863 1 111

TTG ...

LYF ...

13987 1 - 86356526 - 86356639 1 114

ATG ...

MRK ...

13989 1 - 75215622 - 75215846 1 225

GTG ...

VCM ...

13991 19 - 34128805 - 34128846 1 42

CTG ...

LLA ...

13994 19 - 47668491 - 47668538 1 48

CTG ...

LAV ...

13997 19 - 60766322 - 60766585 1 264

CTG ...

LMM ...

13999 19 + 4150558 - 4150602 1 45

TTG ...

LLS ...

14002 19 - 5560197 - 5560247 1 51

CTG ...

LER ...

14005 19 - 37328952 - 37329008 1 57

ATG ...

MNT ...

14007 19 + 44303148 - 44303273 1 126

CTG ...

LSW ...

14009 19 - 20377599 - 20377643 1 45

CTG ...

LKG ...

14012 19 - 18593852 - 18593893 1 42

ATG ...

MQG ...

14015 19 + 44294965 - 44295027 1 63

ATG ...

MEA ...

14017 19 - 60763143 - 60763199 1 57

GTG ...

VMI ...

14019 19 + 6372326 - 6372388 1 63

TTG ...

LRP ...

14021 19 - 60766322 - 60766552 1 231

ATG ...

MMI ...

14023 19 + 47864355 - 47864450 1 96

GTG ...

VAS ...

14026 19 - 37313969 - 37314097 1 129

TTG ...

LSF ...

14028 19 + 46502982 - 46503026 1 45

GTG ...

VTW ...

14031 19 - 37317963 - 37318136 1 174

TTG ...

LPF ...

14033 19 - 37280722 - 37280817 1 96

ATG ...

MSL ...

14036 19 - 5104829 - 5104867 1 39

TTG ...

LSW ...

14039 19 - 60766322 - 60766555 1 234

CTG ...

LMM ...

14041 19 - 6906823 - 6906984 1 162

CTG ...

LGF ...

14043 19 - 6907978 - 6908019 1 42

TTG ...

LES ...

14045 19 - 5560197 - 5560271 1 75

ATG ...

MRL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5