Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

13812 18 - 33209093 - 33213661 2 93

CTG ...

LRA ...

13814 18 - 63676992 - 63679396 2 54

ATG ...

MIL ...

13816 18 - 33203810 - 33205083 2 39

CTG ...

LWA ...

13818 18 - 63676992 - 63679381 2 39

ATG ...

MRT ...

13820 18 + 43977767 - 43981157 2 36

CTG ...

LRM ...

13822 18 + 77778883 - 77779209 2 147

GTG ...

VTD ...

13824 18 + 38447715 - 38451603 2 156

CTG ...

LDF ...

13826 18 + 32854814 - 32859257 2 84

CTG ...

LRW ...

13828 18 - 33209093 - 33213667 2 99

CTG ...

LTL ...

13830 18 + 38447742 - 38451603 2 129

ATG ...

MWL ...

13832 18 + 44106482 - 44107709 3 78

GTG ...

VIN ...

13835 18 - 42229804 - 42229972 2 84

ATG ...

MSA ...

13837 18 - 19983694 - 19985663 2 42

ATG ...

MLL ...

13839 18 + 44010235 - 44012875 2 78

ATG ...

MKR ...

13841 18 + 38447775 - 38451603 2 96

CTG ...

LRE ...

13843 18 + 38447766 - 38451603 2 105

ATG ...

MTR ...

13845 18 + 84871539 - 84873158 2 114

CTG ...

LGV ...

13847 1 - 74293904 - 74293942 1 39

ATG ...

MTG ...

13849 18 + 12534051 - 12537702 2 69

ATG ...

MWT ...

13851 18 + 43977773 - 43981157 2 30

ATG ...

MRK ...

13853 18 + 38447790 - 38451603 2 81

CTG ...

LKL ...

13855 1 - 75215622 - 75215798 1 177

CTG ...

LDH ...

13857 18 - 63676992 - 63679390 2 48

CTG ...

LEA ...

13859 18 + 44016453 - 44018702 2 48

ATG ...

MAK ...

13861 18 + 44010214 - 44012875 2 99

CTG ...

LKR ...

13863 18 - 42229804 - 42229978 2 90

CTG ...

LQM ...

13865 18 - 19966330 - 19968326 2 120

GTG ...

VIV ...

13867 18 + 44016447 - 44018702 2 54

GTG ...

VMM ...

13869 18 - 36742629 - 36744183 2 33

ATG ...

MLL ...

13872 18 + 84871563 - 84873158 2 90

TTG ...

LRT ...

13874 18 - 65989159 - 65991601 3 198

CTG ...

LNR ...

13876 1 + 43953293 - 43953385 1 93

GTG ...

VEL ...

13878 18 + 43982205 - 43983550 2 108

ATG ...

MCK ...

13880 18 - 19985772 - 19987067 2 102

CTG ...

LIK ...

13882 18 - 33203810 - 33205074 2 30

ATG ...

MKK ...

13884 18 + 43977722 - 43981157 2 81

GTG ...

VAQ ...

13886 1 - 135908872 - 135908961 1 90

CTG ...

LTI ...

13888 18 - 65989159 - 65991589 3 186

CTG ...

LDM ...

13890 18 + 43983566 - 43986326 2 78

ATG ...

MPL ...

13892 18 + 43982223 - 43983550 2 90

TTG ...

LDV ...

13894 18 - 19980729 - 19981165 2 105

CTG ...

LCK ...

13896 18 - 34938316 - 34938742 3 237

GTG ...

VFC ...

13898 18 + 35182450 - 35222107 2 147

CTG ...

LTH ...

13900 1 + 58401183 - 58401221 1 39

CTG ...

LRV ...

13902 18 - 19966330 - 19968251 2 45

TTG ...

LPS ...

13904 18 + 61575420 - 61576532 2 156

TTG ...

LIL ...

13906 1 - 86353117 - 86353209 1 93

TTG ...

LMD ...

13908 18 + 43977704 - 43981157 2 99

CTG ...

LTL ...

13916 19 - 45767714 - 45767749 1 36

CTG ...

LRL ...

13919 19 - 20383753 - 20383806 1 54

ATG ...

MLS ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5