Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

13704 1 - 93417539 - 93417631 1 93

TTG ...

LAK ...

13706 18 + 31829240 - 31829296 1 57

ATG ...

MAK ...

13709 18 + 20408818 - 20408928 1 111

CTG ...

LIL ...

13711 18 - 20035330 - 20035407 1 78

ATG ...

MSL ...

13713 18 + 44014918 - 44015019 1 102

ATG ...

MKN ...

13715 18 + 84871548 - 84871637 1 90

ATG ...

MLP ...

13717 18 - 63676875 - 63676955 1 81

ATG ...

MKV ...

13719 18 + 20525265 - 20525321 1 57

ATG ...

MRG ...

13721 18 - 20041441 - 20041536 1 96

ATG ...

MKI ...

13723 18 + 12534003 - 12537702 2 117

TTG ...

LKV ...

13725 18 + 60807908 - 60808298 2 237

GTG ...

VQP ...

13728 18 + 84871548 - 84873158 2 105

ATG ...

MLP ...

13731 18 - 19985772 - 19987073 2 108

GTG ...

VEL ...

13733 18 + 38447697 - 38451603 2 174

TTG ...

LTT ...

13735 18 + 43977731 - 43981157 2 72

ATG ...

MGK ...

13737 18 - 65989159 - 65991643 3 240

GTG ...

VFE ...

13740 18 + 77778895 - 77779209 2 135

CTG ...

LGK ...

13742 18 + 44009229 - 44009939 2 57

ATG ...

MEL ...

13744 18 - 10012255 - 10016595 2 72

ATG ...

MLQ ...

13747 18 - 19985772 - 19987079 2 114

GTG ...

VGV ...

13749 18 + 44016450 - 44018702 2 51

ATG ...

MMA ...

13751 18 + 38447709 - 38451603 2 162

ATG ...

MNL ...

13753 18 + 84871545 - 84873158 2 108

GTG ...

VML ...

13755 1 - 71637248 - 71637283 1 36

GTG ...

VAL ...

13757 18 + 60808076 - 60808298 2 69

ATC ...

ICQ ...

13759 18 - 65989159 - 65991652 3 249

CTG ...

LRQ ...

13761 18 + 44016438 - 44018702 2 63

CTG ...

LSV ...

13763 18 + 44016444 - 44018702 2 57

GTG ...

VVM ...

13765 18 - 19980729 - 19981144 2 84

ATG ...

MHP ...

13767 18 + 12533985 - 12537702 2 135

CTG ...

LIF ...

13769 18 + 43977755 - 43981157 2 48

GTG ...

VNC ...

13771 18 - 19985772 - 19987025 2 60

CTG ...

LGI ...

13773 18 + 44009214 - 44009939 2 72

CTG ...

LPQ ...

13775 18 - 43781218 - 43784614 2 90

ATG ...

MQW ...

13777 18 + 43982190 - 43983550 2 123

GTG ...

VIF ...

13779 18 + 12534045 - 12537702 2 75

CTG ...

LTM ...

13781 18 + 43977764 - 43981157 2 39

GTG ...

VLR ...

13783 18 + 30274452 - 30277010 2 45

ATG ...

MEL ...

13786 18 + 43977683 - 43981157 2 120

ATG ...

MGI ...

13788 18 - 19983694 - 19985657 2 36

TTG ...

LKF ...

13790 1 + 45334742 - 45334834 1 93

CTG ...

LTV ...

13793 18 + 43977656 - 43981157 2 147

GTG ...

VKV ...

13795 18 - 19966330 - 19968284 2 78

GTG ...

VQE ...

13797 18 + 43982214 - 43983550 2 99

ATG ...

MED ...

13799 18 + 77779157 - 77779869 2 114

CTG ...

LHL ...

13801 18 + 77778880 - 77779209 2 150

TTG ...

LVT ...

13803 18 - 20099157 - 20101841 2 39

CTG ...

LKI ...

13805 18 - 43781218 - 43784620 2 96

TTG ...

LKM ...

13807 18 + 61569543 - 61576532 3 186

TTG ...

LGV ...

13810 18 - 65989159 - 65991616 3 213

CTG ...

LEI ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5