Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

13597 18 + 38447715 - 38447825 1 111

CTG ...

LDF ...

13599 18 + 35613465 - 35613506 1 42

TTG ...

LLS ...

13601 18 - 20099112 - 20099141 1 30

ATG ...

MSQ ...

13603 18 + 20399429 - 20399545 1 117

ATG ...

MDI ...

13605 18 + 20340363 - 20340440 1 78

ATG ...

MPT ...

13607 18 + 20408983 - 20409015 1 33

CTG ...

LIL ...

13609 18 - 33205039 - 33205083 1 45

CTG ...

LWA ...

13611 18 + 67401410 - 67401658 1 249

TTG ...

LRL ...

13613 18 - 38203190 - 38203333 1 144

CTG ...

LET ...

13615 18 + 77779129 - 77779209 1 81

ATG ...

MGP ...

13617 18 + 34863362 - 34863418 1 57

GTG ...

VGG ...

13619 18 + 67401403 - 67401525 1 123

GTG ...

VSI ...

13621 18 + 77779157 - 77779234 1 78

CTG ...

LHL ...

13623 18 + 43977656 - 43977802 1 147

GTG ...

VKV ...

13625 18 + 43982214 - 43982315 1 102

ATG ...

MED ...

13627 18 - 65991598 - 65991639 1 42

TTG ...

LKD ...

13630 18 + 77782306 - 77782353 1 48

ATG ...

MGK ...

13632 18 - 19986989 - 19987048 1 60

CTG ...

LVF ...

13634 18 + 80263450 - 80263524 1 75

GTG ...

VAE ...

13637 18 - 19965686 - 19965748 1 63

CTG ...

LPC ...

13639 18 - 20041441 - 20041542 1 102

CTG ...

LLM ...

13641 18 - 20087477 - 20087512 1 36

TTG ...

LYQ ...

13643 18 - 38203190 - 38203342 1 153

ATG ...

MAR ...

13645 18 + 43982190 - 43982315 1 126

GTG ...

VIF ...

13647 18 + 43977755 - 43977802 1 48

GTG ...

VNC ...

13649 18 + 44009214 - 44009258 1 45

CTG ...

LPQ ...

13651 18 - 43784564 - 43784614 1 51

ATG ...

MQW ...

13653 18 - 19986966 - 19987025 1 60

CTG ...

LGI ...

13655 18 - 33206110 - 33206142 1 33

ATG ...

MFW ...

13657 18 - 20041698 - 20041748 1 51

ATG ...

MMD ...

13659 18 + 42523865 - 42523921 1 57

GTG ...

VIS ...

13661 18 + 10617858 - 10617911 1 54

CTG ...

LEP ...

13664 18 + 6788531 - 6788686 1 156

TTG ...

LRR ...

13666 18 - 65984130 - 65984171 1 42

TTG ...

LAI ...

13669 18 + 20333555 - 20333599 1 45

GTG ...

VVA ...

13671 18 + 6788528 - 6788686 1 159

TTG ...

LLR ...

13673 18 - 12223100 - 12223141 1 42

CTG ...

LCL ...

13676 18 + 38447709 - 38447825 1 117

ATG ...

MNL ...

13678 18 + 77780217 - 77780315 1 99

TTG ...

LTA ...

13680 18 + 67401454 - 67401525 1 72

GTG ...

VAR ...

13682 18 + 37840040 - 37840129 1 90

CTG ...

LTN ...

13685 18 - 19986966 - 19987079 1 114

GTG ...

VGV ...

13687 18 + 34863374 - 34863418 1 45

TTG ...

LPG ...

13689 18 + 44009229 - 44009258 1 30

ATG ...

MEL ...

13691 18 - 12223100 - 12223135 1 36

TTG ...

LVW ...

13693 18 + 44007634 - 44007684 1 51

ATG ...

MCS ...

13695 18 + 20536888 - 20536971 1 84

GTG ...

VAL ...

13697 18 + 20525214 - 20525321 1 108

ATG ...

MKN ...

13699 18 + 43977731 - 43977802 1 72

ATG ...

MGK ...

13701 18 - 6209063 - 6209101 1 39

ATG ...

MHL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5