Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

13488 18 - 20107636 - 20107668 1 33

TTG ...

LTV ...

13490 1 - 75216560 - 75216592 1 33

CTG ...

LIS ...

13492 18 + 20408845 - 20408928 1 84

CTG ...

LNR ...

13494 18 + 35249724 - 35249792 1 69

CTG ...

LTS ...

13496 18 + 12534003 - 12534140 1 138

TTG ...

LKV ...

13498 18 - 20035330 - 20035377 1 48

GTG ...

VTA ...

13500 18 + 20340375 - 20340440 1 66

CTG ...

LDL ...

13502 18 + 35251219 - 35251275 1 57

TTG ...

LRR ...

13504 18 - 36515099 - 36515137 1 39

GTG ...

VLR ...

13506 18 - 38203190 - 38203363 1 174

GTG ...

VLR ...

13508 18 + 35182450 - 35182557 1 108

CTG ...

LTH ...

13510 18 - 20085554 - 20085748 1 195

GTG ...

VYL ...

13512 18 - 19968215 - 19968262 1 48

GTG ...

VGH ...

13514 18 - 36773564 - 36773605 1 42

CTG ...

LES ...

13517 18 - 19986966 - 19987067 1 102

CTG ...

LIK ...

13519 18 - 20085554 - 20085655 1 102

GTG ...

VGC ...

13521 18 + 20333570 - 20333599 1 30

GTG ...

VAV ...

13523 18 - 20047091 - 20047120 1 30

CTG ...

LET ...

13525 1 + 172113390 - 172113455 1 66

GTG ...

VSE ...

13527 18 + 53210733 - 53210801 1 69

TTG ...

LTS ...

13529 18 + 44012903 - 44012965 1 63

ATG ...

MIP ...

13531 18 + 42523877 - 42523921 1 45

TTG ...

LTS ...

13534 18 - 7458958 - 7459008 1 51

CTG ...

LKS ...

13537 1 - 135277385 - 135277429 1 45

TTG ...

LAI ...

13540 18 + 80117347 - 80117379 1 33

CTG ...

LER ...

13543 18 + 67401385 - 67401525 1 141

ATG ...

MWC ...

13545 18 + 44010253 - 44010282 1 30

CTG ...

LKQ ...

13547 18 - 20035335 - 20035373 1 39

CTG ...

LHT ...

13549 18 - 33206124 - 33206168 1 45

CTG ...

LGP ...

13551 18 - 19968186 - 19968326 1 141

GTG ...

VIV ...

13553 1 + 106861249 - 106861290 1 42

CTG ...

LQL ...

13555 18 + 50090570 - 50090635 1 66

GTG ...

VPR ...

13558 18 - 42229937 - 42229978 1 42

CTG ...

LQM ...

13561 18 - 19974041 - 19974163 1 123

ATG ...

MRG ...

13563 18 - 19968215 - 19968304 1 90

ATG ...

MSA ...

13565 18 + 20408938 - 20409015 1 78

ATG ...

MPT ...

13567 18 - 19965686 - 19965883 1 198

GTG ...

VLC ...

13569 18 - 20035330 - 20035395 1 66

GTG ...

VTA ...

13571 18 - 38203190 - 38203303 1 114

TTG ...

LIE ...

13573 18 - 20035330 - 20035383 1 54

CTG ...

LKV ...

13575 1 + 107524685 - 107524825 1 141

ATG ...

MPS ...

13577 18 + 20333543 - 20333599 1 57

CTG ...

LVQ ...

13579 18 + 12534051 - 12534140 1 90

ATG ...

MWT ...

13581 18 + 84871539 - 84871637 1 99

CTG ...

LGV ...

13583 18 + 6784576 - 6784620 1 45

ATG ...

MSQ ...

13585 18 + 44010235 - 44010282 1 48

ATG ...

MKR ...

13587 18 + 67401416 - 67401658 1 243

CTG ...

LSS ...

13589 18 - 46593419 - 46593472 1 54

ATG ...

MLI ...

13592 1 - 86357068 - 86357154 1 87

GTG ...

VMR ...

13594 18 + 32854814 - 32854888 1 75

CTG ...

LRW ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5