Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

13372 18 - 63676875 - 63676949 1 75

GTG ...

VMS ...

13375 18 + 30276981 - 30277010 1 30

GTG ...

VAE ...

13377 18 + 38447790 - 38447825 1 36

CTG ...

LKL ...

13380 18 - 20035330 - 20035401 1 72

TTG ...

LYV ...

13382 18 + 20408932 - 20409015 1 84

CTG ...

LRM ...

13385 18 + 38447775 - 38447825 1 51

CTG ...

LRE ...

13387 18 + 77780256 - 77780315 1 60

GTG ...

VSA ...

13389 18 - 43784642 - 43784710 1 69

ATG ...

MTT ...

13391 18 + 38447766 - 38447825 1 60

ATG ...

MTR ...

13393 18 + 77782303 - 77782353 1 51

CTG ...

LMG ...

13396 18 + 12510488 - 12510532 1 45

TTG ...

LPS ...

13399 1 + 193304493 - 193304555 1 63

CTG ...

LWG ...

13401 18 - 33206124 - 33206180 1 57

CTG ...

LAL ...

13404 18 + 38447742 - 38447825 1 84

ATG ...

MWL ...

13406 18 + 35249736 - 35249792 1 57

CTG ...

LKT ...

13408 1 - 135889648 - 135889929 1 282

GTG ...

VSL ...

13410 18 + 20333558 - 20333599 1 42

GTG ...

VAV ...

13412 18 + 20525286 - 20525321 1 36

TTG ...

LKQ ...

13414 18 + 57371395 - 57371424 1 30

CTG ...

LSW ...

13417 18 + 12528749 - 12528778 1 30

TTG ...

LCC ...

13419 18 - 43784564 - 43784620 1 57

TTG ...

LKM ...

13421 18 + 61078879 - 61078971 1 93

GTG ...

VFT ...

13424 18 - 19974094 - 19974150 1 57

ATG ...

MQA ...

13426 18 + 44007630 - 44007659 1 30

ATG ...

MNV ...

13428 18 - 39424379 - 39424411 1 33

ATG ...

MSS ...

13431 18 - 20035330 - 20035359 1 30

CTG ...

LEK ...

13433 18 - 20094598 - 20094642 1 45

ATG ...

MKI ...

13435 18 + 43977764 - 43977802 1 39

GTG ...

VLR ...

13437 18 + 43977683 - 43977802 1 120

ATG ...

MGI ...

13439 18 + 20525241 - 20525321 1 81

CTG ...

LCI ...

13441 18 + 12534045 - 12534140 1 96

CTG ...

LTM ...

13443 18 + 12574287 - 12574358 1 72

CTG ...

LET ...

13445 18 - 34908132 - 34908188 1 57

TTG ...

LMK ...

13448 18 + 12533985 - 12534140 1 156

CTG ...

LIF ...

13450 1 - 135882477 - 135882539 1 63

TTG ...

LTP ...

13452 18 - 34938610 - 34938681 1 72

TTG ...

LLE ...

13455 18 - 36515099 - 36515143 1 45

GTG ...

VIV ...

13458 18 + 53210724 - 53210801 1 78

TTG ...

LRI ...

13461 18 + 20399450 - 20399545 1 96

CTG ...

LWA ...

13463 18 + 84871545 - 84871637 1 93

GTG ...

VML ...

13465 18 - 19974041 - 19974130 1 90

ATG ...

MCG ...

13467 18 + 35613361 - 35613399 1 39

CTG ...

LFP ...

13470 18 + 43990675 - 43990746 1 72

CTG ...

LKK ...

13472 18 + 61124219 - 61124251 1 33

CTG ...

LED ...

13475 18 - 20041698 - 20041769 1 72

ATG ...

MYQ ...

13477 18 + 20340357 - 20340440 1 84

CTG ...

LKM ...

13479 1 + 107524601 - 107524825 1 225

ATG ...

MML ...

13481 18 + 12525803 - 12525868 1 66

CTG ...

LAG ...

13484 18 + 38447697 - 38447825 1 129

TTG ...

LTT ...

13486 18 - 19986966 - 19987073 1 108

GTG ...

VEL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5