Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

13250 17 + 35052895 - 35053062 2 42

GTG ...

VPS ...

13252 17 + 35052805 - 35053062 2 132

CTG ...

LPR ...

13254 17 - 70996236 - 70996744 2 84

ATG ...

MAS ...

13256 17 - 12946410 - 12947392 2 42

ATG ...

MGQ ...

13258 1 - 125397166 - 125397219 1 54

CTG ...

LVV ...

13260 17 - 6739467 - 6739697 2 69

ATG ...

MTA ...

13262 17 + 35263593 - 35263872 2 90

GTG ...

VVP ...

13265 17 - 35836009 - 35836287 3 156

TTG ...

LNS ...

13267 17 - 65864667 - 65867603 2 138

CTG ...

LIQ ...

13269 18 + 34863386 - 34863418 1 33

ATG ...

MNA ...

13272 18 + 43977704 - 43977802 1 99

CTG ...

LTL ...

13275 18 - 37851543 - 37851620 1 78

GTG ...

VMD ...

13278 1 + 172119980 - 172120030 1 51

CTG ...

LPP ...

13281 18 + 35222066 - 35222107 1 42

CTG ...

LDV ...

13284 18 - 43784642 - 43784716 1 75

ATG ...

MKM ...

13287 18 + 43982223 - 43982315 1 93

TTG ...

LDV ...

13289 18 + 43983566 - 43983616 1 51

ATG ...

MPL ...

13291 18 - 20047091 - 20047135 1 45

ATG ...

MWK ...

13294 18 - 60501394 - 60501432 1 39

CTG ...

LLV ...

13297 18 + 43977722 - 43977802 1 81

GTG ...

VAQ ...

13299 18 + 35590395 - 35590430 1 36

TTG ...

LAE ...

13302 18 + 20333535 - 20333585 1 51

CTG ...

LGN ...

13305 18 - 20089606 - 20089665 1 60

TTG ...

LSA ...

13308 18 + 43982205 - 43982315 1 111

ATG ...

MCK ...

13310 18 - 19965686 - 19965829 1 144

CTG ...

LWY ...

13313 1 + 130719274 - 130719312 1 39

CTG ...

LMK ...

13315 18 + 43990696 - 43990746 1 51

CTG ...

LEA ...

13317 18 + 6784573 - 6784620 1 48

ATG ...

MMS ...

13320 18 + 43990690 - 43990746 1 57

CTG ...

LKL ...

13322 18 + 20520559 - 20520618 1 60

TTG ...

LQN ...

13325 18 - 19968215 - 19968322 1 108

TTG ...

LYS ...

13327 18 + 20525280 - 20525321 1 42

TTG ...

LKL ...

13329 18 + 84871563 - 84871637 1 75

TTG ...

LRT ...

13332 18 - 20085554 - 20085742 1 189

TTG ...

LCG ...

13334 18 - 20038238 - 20038267 1 30

CTG ...

LYW ...

13336 18 + 67392967 - 67393008 1 42

CTG ...

LPW ...

13339 1 - 178331135 - 178331176 1 42

ATG ...

MKT ...

13342 18 - 38203190 - 38203285 1 96

GTG ...

VNA ...

13345 18 - 19965624 - 19965743 1 120

GTG ...

VWP ...

13347 1 - 185288043 - 185288087 1 45

CTG ...

LQV ...

13350 18 + 35251207 - 35251275 1 69

CTG ...

LPR ...

13352 18 - 38203190 - 38203264 1 75

CTG ...

LGI ...

13354 18 + 6770074 - 6770109 1 36

ATG ...

MIP ...

13356 18 + 44010214 - 44010282 1 69

CTG ...

LKR ...

13358 18 + 77779152 - 77779265 1 114

CTG ...

LYC ...

13361 18 + 20536909 - 20536971 1 63

ATG ...

MVR ...

13363 18 + 35251204 - 35251275 1 72

GTG ...

VLP ...

13365 18 - 20038230 - 20038262 1 33

CTG ...

LEL ...

13367 18 + 30276972 - 30277010 1 39

TTG ...

LER ...

13370 18 - 43784642 - 43784728 1 87

ATG ...

MTT ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5