Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

13138 17 + 35053052 - 35053165 1 114

CTG ...

LNP ...

13140 17 + 26695363 - 26695407 1 45

TTG ...

LQF ...

13142 17 + 34267568 - 34267935 2 63

CTG ...

LSR ...

13145 17 + 35253071 - 35253285 2 117

ATG ...

MTC ...

13147 17 - 6739877 - 6741083 3 126

CTG ...

LDT ...

13149 17 + 35052792 - 35053055 2 138

CTG ...

LYR ...

13151 17 - 6741563 - 6742538 3 204

TTG ...

LQV ...

13153 17 + 12920815 - 12922167 2 117

GTG ...

VYR ...

13155 17 + 23807167 - 23808362 3 153

ATG ...

MPR ...

13158 17 + 20960988 - 20961600 2 42

GTG ...

VYG ...

13161 17 - 45570368 - 45571952 3 249

GTG ...

VSI ...

13164 17 - 35835911 - 35836231 2 198

CTG ...

LGL ...

13167 17 - 6739877 - 6741104 3 147

ATG ...

MDS ...

13169 17 - 6741563 - 6742562 3 228

GTG ...

VVA ...

13171 17 + 86826563 - 86827564 2 126

TTG ...

LRS ...

13174 1 - 161244175 - 161244246 1 72

TTG ...

LDP ...

13176 17 + 26682711 - 26695414 2 75

TTG ...

LLL ...

13178 17 - 12946410 - 12947395 2 45

CTG ...

LMG ...

13180 17 + 34315495 - 34315887 3 99

GTG ...

VSG ...

13183 17 + 35052529 - 35053055 3 165

CTG ...

LWT ...

13185 17 + 36943362 - 36945180 2 96

GTG ...

VRN ...

13187 17 - 14681362 - 14683348 3 285

CTG ...

LQL ...

13189 1 - 45388257 - 45388295 1 39

CTG ...

LVR ...

13191 17 - 6739467 - 6739727 2 99

GTG ...

VPS ...

13193 17 + 12920812 - 12922167 2 120

TTG ...

LVY ...

13195 17 - 14681362 - 14683324 3 261

TTG ...

LWK ...

13197 17 - 47687281 - 47687938 2 48

GTG ...

VSS ...

13200 17 - 12946410 - 12947380 2 30

CTG ...

LSP ...

13202 1 + 193304467 - 193304565 1 99

CTG ...

LLP ...

13204 17 - 65864667 - 65867588 2 123

ATG ...

MTT ...

13206 1 - 75215622 - 75215837 1 216

CTG ...

LSN ...

13208 1 + 135827440 - 135827541 1 102

TTG ...

LGP ...

13211 17 - 70996236 - 70996759 2 99

TTG ...

LTR ...

13214 17 + 12920839 - 12922167 2 93

CTG ...

LRN ...

13216 17 - 6741563 - 6742544 3 210

CTG ...

LRL ...

13218 17 - 6741563 - 6742565 3 231

CTG ...

LVV ...

13220 17 - 6739467 - 6739712 2 84

GTG ...

VRA ...

13222 17 + 26682702 - 26695414 2 84

TTG ...

LFS ...

13224 17 - 45570368 - 45571943 3 240

ATG ...

MVL ...

13226 17 + 36943353 - 36945180 2 105

GTG ...

VGC ...

13228 1 + 43953356 - 43953385 1 30

GTG ...

VWH ...

13230 17 + 35052497 - 35053062 3 204

CTG ...

LAQ ...

13232 17 - 14681362 - 14683339 3 276

GTG ...

VPT ...

13234 17 + 35068877 - 35069341 2 123

ATG ...

MSL ...

13236 17 - 6741563 - 6742568 3 234

GTG ...

VLV ...

13238 17 - 70996236 - 70996735 2 75

TTG ...

LTR ...

13240 17 + 35052464 - 35053062 3 237

CTG ...

LPL ...

13242 17 + 74492475 - 74493950 2 54

ATG ...

MRI ...

13245 17 + 26682714 - 26695414 2 72

CTG ...

LLS ...

13247 1 + 193168598 - 193168639 1 42

ATG ...

MES ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5