Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

13023 17 - 14689786 - 14689878 1 93

CTG ...

LCR ...

13025 17 + 35246950 - 35246988 1 39

TTG ...

LAV ...

13028 17 - 33952217 - 33952285 1 69

CTG ...

LRE ...

13030 17 + 35053079 - 35053165 1 87

CTG ...

LDI ...

13032 17 + 35145338 - 35145394 1 57

TTG ...

LEP ...

13034 1 - 178332130 - 178332171 1 42

CTG ...

LYF ...

13036 17 - 32185453 - 32185485 1 33

CTG ...

LAA ...

13038 17 - 26507108 - 26507164 1 57

GTG ...

VPI ...

13041 17 + 12919822 - 12919935 1 114

GTG ...

VRY ...

13043 17 - 56614497 - 56614529 1 33

CTG ...

LLR ...

13045 17 + 74573572 - 74573628 1 57

GTG ...

VMI ...

13047 17 - 65857735 - 65857779 1 45

TTG ...

LFT ...

13049 17 - 32188417 - 32188455 1 39

TTG ...

LTC ...

13051 1 + 106875089 - 106875175 1 87

CTG ...

LLT ...

13053 17 - 70996236 - 70996289 1 54

GTG ...

VAP ...

13056 17 + 35554679 - 35554876 1 198

TTG ...

LGP ...

13058 17 - 47687192 - 47687245 1 54

CTG ...

LAR ...

13060 17 - 35836125 - 35836247 1 123

TTG ...

LVD ...

13062 17 + 35146123 - 35146173 1 51

ATG ...

MEL ...

13064 17 + 28776509 - 28776583 1 75

CTG ...

LVC ...

13066 17 - 14676997 - 14677053 1 57

TTG ...

LIR ...

13068 1 - 93421080 - 93421211 1 132

GTG ...

VKR ...

13070 17 - 12947351 - 12947392 1 42

ATG ...

MGQ ...

13072 17 - 27786203 - 27786232 1 30

ATG ...

MSG ...

13075 17 - 6739626 - 6739697 1 72

ATG ...

MTA ...

13077 17 - 56614497 - 56614526 1 30

CTG ...

LRT ...

13079 17 + 26124646 - 26124723 1 78

GTG ...

VTM ...

13081 17 + 29098503 - 29098559 1 57

TTG ...

LRC ...

13083 17 + 12918119 - 12918175 1 57

GTG ...

VSW ...

13085 17 - 73906239 - 73906280 1 42

CTG ...

LYV ...

13088 17 - 33778358 - 33778396 1 39

TTG ...

LVN ...

13091 17 - 65864667 - 65864732 1 66

CTG ...

LKA ...

13093 17 + 35140232 - 35140345 1 114

GTG ...

VSR ...

13096 17 + 31098243 - 31098287 1 45

TTG ...

LPT ...

13099 17 - 35836154 - 35836231 1 78

CTG ...

LGL ...

13101 17 - 35963317 - 35963385 1 69

CTG ...

LRN ...

13104 17 + 12920815 - 12920874 1 60

GTG ...

VYR ...

13106 17 - 14676997 - 14677044 1 48

ATG ...

MES ...

13108 17 + 35069348 - 35069401 1 54

CTG ...

LRH ...

13110 17 + 24044989 - 24045027 1 39

GTG ...

VCR ...

13113 17 - 73896987 - 73897076 1 90

CTG ...

LSD ...

13115 17 + 23674908 - 23674937 1 30

CTG ...

LAL ...

13118 17 - 57007705 - 57007761 1 57

CTG ...

LRT ...

13121 1 + 34173046 - 34173111 1 66

GTG ...

VSE ...

13124 17 + 5899380 - 5899424 1 45

CTG ...

LGQ ...

13127 17 - 47687192 - 47687233 1 42

TTG ...

LSD ...

13129 17 - 84740057 - 84740119 1 63

TTG ...

LLS ...

13132 17 - 14689794 - 14689838 1 45

CTG ...

LRS ...

13134 17 + 29098643 - 29098834 1 192

CTG ...

LGP ...

13136 17 - 6739626 - 6739727 1 102

GTG ...

VPS ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5