Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

12910 17 + 71657537 - 71657614 1 78

ATG ...

MRR ...

12912 1 - 54994427 - 54994456 1 30

CTG ...

LNM ...

12914 17 + 36943362 - 36943454 1 93

GTG ...

VRN ...

12917 17 + 65836034 - 65836087 1 54

TTG ...

LVT ...

12919 1 - 63149953 - 63150006 1 54

TTG ...

LYH ...

12922 17 + 53506347 - 53506379 1 33

CTG ...

LVQ ...

12924 17 + 35556144 - 35556251 1 108

CTG ...

LPF ...

12926 17 - 12697506 - 12697538 1 33

GTG ...

VYC ...

12929 1 + 171383680 - 171383724 1 45

GTG ...

VAS ...

12932 17 + 36943353 - 36943454 1 102

GTG ...

VGC ...

12934 17 - 47687895 - 47687957 1 63

GTG ...

VGD ...

12936 17 - 25234853 - 25234885 1 33

ATG ...

MQS ...

12939 17 + 28881294 - 28881398 1 105

TTG ...

LPN ...

12942 17 + 35555337 - 35555477 1 141

CTG ...

LQR ...

12944 1 + 86136987 - 86137109 1 123

CTG ...

LKD ...

12946 17 + 12920839 - 12920874 1 36

CTG ...

LRN ...

12948 17 + 35068900 - 35068959 1 60

CTG ...

LCW ...

12950 17 - 34283565 - 34283609 1 45

CTG ...

LGP ...

12953 17 + 74573575 - 74573628 1 54

ATG ...

MIC ...

12956 17 + 35050452 - 35050484 1 33

CTG ...

LKN ...

12959 17 + 35068886 - 35068981 1 96

CTG ...

LLQ ...

12961 17 - 78677357 - 78677386 1 30

GTG ...

VKI ...

12964 17 + 71799051 - 71799095 1 45

GTG ...

VGS ...

12967 17 + 29098772 - 29098834 1 63

CTG ...

LKI ...

12969 17 - 34283565 - 34283624 1 60

CTG ...

LQG ...

12971 17 - 6754621 - 6754854 1 234

CTG ...

LSS ...

12973 17 - 65592287 - 65592319 1 33

TTG ...

LKC ...

12975 17 + 74573599 - 74573628 1 30

GTG ...

VKS ...

12977 17 + 29491895 - 29492029 1 135

TTG ...

LPQ ...

12979 1 - 135886729 - 135886830 1 102

CTG ...

LCS ...

12981 1 - 71650558 - 71650605 1 48

CTG ...

LHR ...

12983 17 - 35836125 - 35836244 1 120

GTG ...

VDL ...

12985 17 - 24442645 - 24442689 1 45

TTG ...

LET ...

12987 17 - 65592287 - 65592325 1 39

GTG ...

VCL ...

12989 17 + 35552164 - 35552289 1 126

ATG ...

MSF ...

12991 17 + 24740085 - 24740129 1 45

CTG ...

LWQ ...

12993 17 + 35555136 - 35555240 1 105

ATG ...

MGK ...

12995 17 - 6740955 - 6741083 1 129

CTG ...

LDT ...

12997 1 - 71641148 - 71641213 1 66

ATG ...

MVR ...

12999 17 + 13828989 - 13829048 1 60

TTG ...

LGQ ...

13001 17 + 35053043 - 35053165 1 123

CTG ...

LAA ...

13003 17 - 14689945 - 14689998 1 54

TTG ...

LRL ...

13006 17 + 33925671 - 33925724 1 54

ATG ...

MSP ...

13008 17 - 14676997 - 14677032 1 36

ATG ...

MLV ...

13010 17 + 35552194 - 35552289 1 96

GTG ...

VHN ...

13012 17 - 14681739 - 14681777 1 39

CTG ...

LWL ...

13014 17 + 13828983 - 13829048 1 66

CTG ...

LKL ...

13016 17 - 26938574 - 26938615 1 42

ATG ...

MNG ...

13019 17 + 33925665 - 33925724 1 60

ATG ...

MTM ...

13021 17 - 78677357 - 78677395 1 39

CTG ...

LIP ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5