Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

12785 17 + 33925653 - 33925724 1 72

TTG ...

LQL ...

12788 17 - 23676138 - 23676173 1 36

CTG ...

LEK ...

12791 17 + 26124640 - 26124723 1 84

GTG ...

VTV ...

12793 1 - 86357068 - 86357124 1 57

ATG ...

MIA ...

12795 17 + 14399521 - 14399562 1 42

GTG ...

VCE ...

12798 17 - 10273985 - 10274041 1 57

TTG ...

LDL ...

12801 17 - 6741438 - 6741587 1 150

CTG ...

LQS ...

12804 17 + 35146114 - 35146173 1 60

ATG ...

MNR ...

12807 1 - 63160867 - 63160932 1 66

TTG ...

LPR ...

12809 17 - 47687192 - 47687272 1 81

TTG ...

LGL ...

12812 17 + 32486974 - 32487129 1 156

CTG ...

LGT ...

12815 17 + 29098658 - 29098834 1 177

GTG ...

VTT ...

12817 17 + 24860991 - 24861053 1 63

CTG ...

LQM ...

12819 17 + 29491904 - 29492029 1 126

CTG ...

LRG ...

12822 17 + 35556000 - 35556251 1 252

CTG ...

LRQ ...

12824 17 + 53506350 - 53506379 1 30

GTG ...

VQT ...

12827 1 - 135882477 - 135882521 1 45

ATG ...

MSR ...

12829 1 + 134587969 - 134588043 1 75

TTG ...

LGA ...

12831 17 - 33646521 - 33646565 1 45

CTG ...

LPD ...

12834 17 + 26695355 - 26695414 1 60

TTG ...

LAD ...

12837 17 + 29491868 - 29492029 1 162

CTG ...

LAG ...

12839 1 + 134621971 - 134622135 1 165

CTG ...

LKR ...

12841 1 - 75215622 - 75215882 1 261

GTG ...

VPG ...

12843 17 + 35556033 - 35556251 1 219

CTG ...

LPF ...

12845 17 + 35145332 - 35145394 1 63

GTG ...

VDL ...

12847 17 + 53506332 - 53506379 1 48

ATG ...

MNH ...

12849 1 + 193328726 - 193328788 1 63

CTG ...

LPG ...

12851 17 - 25343652 - 25343684 1 33

CTG ...

LGM ...

12854 17 + 29098697 - 29098834 1 138

CTG ...

LPC ...

12856 17 + 35068867 - 35068959 1 93

CTG ...

LIL ...

12858 17 - 10273985 - 10274053 1 69

TTG ...

LGE ...

12860 17 + 12919843 - 12919935 1 93

CTG ...

LII ...

12863 17 + 43607256 - 43607378 1 123

ATG ...

MDV ...

12866 17 - 12947351 - 12947395 1 45

CTG ...

LMG ...

12869 17 + 35055302 - 35055403 1 102

ATG ...

MKP ...

12872 17 + 20960988 - 20961017 1 30

GTG ...

VYG ...

12875 17 - 24441585 - 24441665 1 81

GTG ...

VRC ...

12877 17 - 65582720 - 65582752 1 33

ATG ...

MIW ...

12880 17 + 12918128 - 12918175 1 48

CTG ...

LTC ...

12882 1 + 185369627 - 185369662 1 36

TTG ...

LQL ...

12884 17 - 32188417 - 32188485 1 69

ATG ...

MLQ ...

12887 17 + 24857551 - 24857628 1 78

CTG ...

LPY ...

12889 17 - 47687226 - 47687297 1 72

TTG ...

LTQ ...

12891 17 - 24442645 - 24442701 1 57

ATG ...

MFR ...

12894 17 - 12947351 - 12947380 1 30

CTG ...

LSP ...

12896 17 + 47465697 - 47465735 1 39

ATG ...

MAT ...

12899 17 + 12920812 - 12920874 1 63

TTG ...

LVY ...

12902 17 - 35119772 - 35119819 1 48

CTG ...

LDS ...

12905 17 + 28776521 - 28776583 1 63

TTG ...

LHH ...

12908 17 - 47687192 - 47687284 1 93

TTG ...

LIL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5