Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

12663 16 - 36450731 - 36452296 3 150

CTG ...

LSQ ...

12665 16 - 5105025 - 5105954 2 33

GTG ...

VNS ...

12667 16 + 17035444 - 17038430 2 225

CTG ...

LDL ...

12669 16 + 77062460 - 77069084 2 45

CTG ...

LKR ...

12671 16 - 31111062 - 31116033 2 72

CTG ...

LLI ...

12673 16 + 20660002 - 20660349 2 108

GTG ...

VST ...

12675 16 - 31111062 - 31116039 2 78

TTG ...

LQL ...

12677 16 - 36122360 - 36131019 3 147

CTG ...

LPQ ...

12679 16 + 17035507 - 17038430 2 162

CTG ...

LAH ...

12681 16 - 36122360 - 36125047 2 84

ATG ...

MRN ...

12683 16 - 84971420 - 84978090 2 69

CTG ...

LCQ ...

12685 16 + 20655025 - 20655279 2 45

CTG ...

LPL ...

12687 16 - 31111062 - 31116054 2 93

CTG ...

LFR ...

12689 1 - 178332143 - 178332223 1 81

TTG ...

LNL ...

12691 16 + 84846311 - 84852460 2 60

ATG ...

MGC ...

12693 16 + 17035490 - 17038455 2 204

TTG ...

LKL ...

12695 16 + 95715127 - 95716166 2 192

CTG ...

LFH ...

12698 16 - 11232693 - 11235411 2 66

TTG ...

LRS ...

12700 16 - 36122360 - 36125038 2 75

ATG ...

MKY ...

12702 16 - 17859521 - 17872613 2 54

GTG ...

VMA ...

12704 16 - 44107829 - 44109525 2 90

CTG ...

LAR ...

12706 16 - 11228129 - 11229249 2 108

TTG ...

LMD ...

12708 16 - 56806683 - 56809912 2 108

TTG ...

LPI ...

12711 16 + 31954163 - 31956353 2 48

CTA ...

LCG ...

12714 16 + 20660011 - 20660349 2 99

TTG ...

LTL ...

12716 17 + 24860997 - 24861053 1 57

ATG ...

MRC ...

12719 17 - 56616363 - 56616407 1 45

GTG ...

VSE ...

12722 17 + 43611858 - 43611902 1 45

TTG ...

LIS ...

12725 17 + 29098763 - 29098834 1 72

CTG ...

LSG ...

12728 17 + 13896095 - 13896160 1 66

ATG ...

MRS ...

12731 17 - 6739626 - 6739712 1 87

GTG ...

VRA ...

12734 17 + 29098508 - 29098618 1 111

ATG ...

MRS ...

12736 17 - 65857669 - 65857722 1 54

ATG ...

MGS ...

12739 17 + 26124622 - 26124723 1 102

CTG ...

LDK ...

12742 17 - 10273985 - 10274056 1 72

TTG ...

LLG ...

12745 17 + 24740094 - 24740129 1 36

GTG ...

VWQ ...

12748 17 - 24441585 - 24441635 1 51

GTG ...

VRT ...

12751 1 + 107590186 - 107590248 1 63

CTG ...

LAL ...

12753 1 - 86356526 - 86356660 1 135

GTG ...

VWL ...

12755 1 - 86353117 - 86353197 1 81

CTG ...

LFH ...

12757 17 + 71657549 - 71657614 1 66

ATG ...

MRT ...

12760 17 - 35836159 - 35836287 1 129

TTG ...

LNS ...

12763 17 + 35556114 - 35556251 1 138

CTG ...

LWP ...

12766 17 + 35555157 - 35555240 1 84

ATG ...

MGK ...

12768 17 + 75390499 - 75390543 1 45

CTG ...

LYT ...

12771 17 + 65836037 - 65836087 1 51

GTG ...

VTD ...

12774 17 + 35552158 - 35552289 1 132

GTG ...

VPM ...

12776 17 + 35068877 - 35068981 1 105

ATG ...

MSL ...

12779 17 - 33952217 - 33952273 1 57

CTG ...

LER ...

12782 17 + 12918076 - 12918204 1 129

CTG ...

LKL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5